Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_H11
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 144 1e-35
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 84 2e-17
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 84 2e-17
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 84 2e-17
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 77 4e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 37 0.004
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.16
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 30 0.49
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.49
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.49
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.85
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 1.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 1.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.4
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 3.4
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.5
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 6.0
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 26 6.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 6.0
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 26 7.9
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 144 bits (350), Expect = 1e-35
Identities = 64/83 (77%), Positives = 73/83 (87%)
Frame = +2
Query: 614 KEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQ 793
KEHVN+VFIGHVDAGKST+GG I+ LTGMVDKRT+EK EREA+E +ESWYLSWALD+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 794 EERDKGXTVEVGRAYFETEXKHF 862
EER+KG TVEVGRAYFETE + F
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRF 318
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/79 (46%), Positives = 55/79 (69%)
Frame = +2
Query: 611 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 790
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 791 QEERDKGXTVEVGRAYFET 847
+ ER++G T+++ FET
Sbjct: 64 KAERERGITIDIALWKFET 82
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/79 (46%), Positives = 55/79 (69%)
Frame = +2
Query: 611 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 790
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 791 QEERDKGXTVEVGRAYFET 847
+ ER++G T+++ FET
Sbjct: 64 KAERERGITIDIALWKFET 82
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/79 (46%), Positives = 55/79 (69%)
Frame = +2
Query: 611 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 790
+K H+NVV IGHVD+GKST G ++ G +DKRT+EK+E+EA E + S+ +W LD
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 791 QEERDKGXTVEVGRAYFET 847
+ ER++G T+++ FET
Sbjct: 64 KAERERGITIDIALWKFET 82
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 76.6 bits (180), Expect = 4e-15
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Frame = +2
Query: 563 KKIPKKKP------PRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 724
KKI K+ P P + + + K V++V GHVD+GKST+ G+IM G ++ R+++K
Sbjct: 152 KKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211
Query: 725 YEREAREKSRESWYLSWALDTNQEERDKGXTVEVGRAYFETEXK 856
EA + S+ +W LDT +EER +G T++V FE++ K
Sbjct: 212 LHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +2
Query: 611 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTN 790
KK HVN+ IGHVD GK+T+ I + + + Y + +D
Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQ---------------IDKA 94
Query: 791 QEERDKGXTVEVGRAYFETEXKHF 862
EE+ +G T+ +ET +H+
Sbjct: 95 PEEKARGITISSAHVEYETANRHY 118
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 626 NVVFIGHVDAGKSTIGGQIMSLTGMVDKRT-----LEKYEREAR 742
N I H+D GKST+ I+ LTG++++ L+K E E R
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVERR 103
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 560 TKKIPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSL 691
+KK+ K ++E+ K + + V+ +G D+GKSTI QI L
Sbjct: 13 SKKLNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKIL 57
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 592 SRRYTKQKRTCKCSIYRTCRCRKVDYWWSNNVTHWNG 702
SR+ ++ +TCKC T RC K +N +WNG
Sbjct: 289 SRKNSEVSKTCKCLQKETIRCNK-----KSNCYNWNG 320
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 569 IPKKKPPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMVDKR 712
+P P ++ + +E++ N + HVD GK+T+ +++ G++ +
Sbjct: 1 MPVIPPEKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 0.85
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 599 DTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWA 778
D + K+ N+ H+D+GK+T +++ TG + K E R K +
Sbjct: 52 DKKRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI------KDIHEVRGKDN----VGAK 101
Query: 779 LDTNQEERDKGXTVE 823
+D + ER+KG T++
Sbjct: 102 MDFMELEREKGITIQ 116
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 584 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 703
P V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 584 PPRVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 703
P V + K +V N+ I HVD GKST+ ++ G++
Sbjct: 6 PEEVRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGII 46
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 704 DKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGXTVEVG 829
D+ T+EKY+R+A E+ + L L +++ +G V++G
Sbjct: 471 DETTIEKYKRKAAERKQRRKELR-QLKKTKDDEGEGSDVDLG 511
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 662 STIGGQIMSLTGMVDKR---TLEKYEREAREKSRESWYLSWALDTNQE 796
+ + +++ T VDK+ TL K + +K+ +S+Y ++ D NQE
Sbjct: 237 NNLATSLLAQTETVDKKHHETLMKQSQSWSQKAVDSYYFAYPKDRNQE 284
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 608 SKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 724
S++ +N+ IGHV GKST+ I + + K LE+
Sbjct: 19 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELER 57
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.5
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +2
Query: 95 SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 274
S+TI S++ + S + + I + S+ SS STL+ ++M SFS +S ST
Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342
Query: 275 DSPTS 289
S +S
Sbjct: 343 ISSSS 347
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 569 IPKKKPPRVEDTRSKKEHVNVV-FIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREARE 745
+ KK+P + + T++KKE + V+ + + G + + TG K + + E E E
Sbjct: 183 VQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPVNENESEDEE 242
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 167 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ 295
G KD N +S I + A + + S KP AS +T++P+S Q
Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQ 520
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = -1
Query: 318 FEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPFSPIISASF 139
+EE L + E+G +++SL G++ N+ ++ E+ + ++F + I+ F
Sbjct: 1145 YEEQLLNLKNELGWTIVSLTAGGIKLATNNTALSPYSAEVTVEILRQNF-QVNVDIACKF 1203
Query: 138 SHESGA 121
+ES A
Sbjct: 1204 PNESNA 1209
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 219 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG*LKLSK 43
+TF+ ++F L + + SF H G P++D I E K L+F L L+K
Sbjct: 94 WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLLLNK 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,626
Number of Sequences: 5004
Number of extensions: 46226
Number of successful extensions: 221
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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