Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H08
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    80   5e-16
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    78   1e-15
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    33   0.052
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    30   0.48 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   4.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   4.5  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   5.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.8  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 79.8 bits (188), Expect = 5e-16
 Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 1/152 (0%)
 Frame = +3

Query: 348 NLPPVKYSLAKSEETITEVTTLSNGLRVASEKK-FGQFCTAGVVIDSGPRYEVAYPNGIC 524
           NLP +    A +    TE TTL NGL VA+E   + Q  T  V +D+G R E A  NG  
Sbjct: 6   NLPKLVRRFATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAA 65

Query: 525 HFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAE 704
           HFLE L+F  T K  ++  +  E E  G   +   SR+ TVY   A    +     VLA+
Sbjct: 66  HFLEHLAFKGT-KNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLAD 124

Query: 705 VTLRPILSADEIEAARQAVAFELETLSMRPEQ 800
           +     +SA  +E  RQ +  E E +    ++
Sbjct: 125 ILTNSSISASAVERERQVILREQEEVDKMADE 156


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
 Frame = +3

Query: 354 PPVKYSLAKSEETITEVTT--LSNGLRVASEKKFGQFCTAGVVIDSGPRYEVAYPNGICH 527
           P +K   +  +  + EV T  L NG+    + + G F   GV + +G RYE    +G+ H
Sbjct: 30  PALKSFYSTQDPALNEVRTEKLKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSH 89

Query: 528 FLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQVLAEV 707
           F+++L+F AT +    + M  +LE  GG   C  SR++ +Y  +  +  +++++++LAE 
Sbjct: 90  FMDRLAFQATERTPVGE-MKAKLENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAET 148

Query: 708 TLRPILSADEIEAARQAVAFELETLSMRPE 797
            L P +  D++   R ++ +E   L  +P+
Sbjct: 149 VLAPKIQEDDLVHYRDSIIYENSELWTKPD 178


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 516 GICHFLEKLSFGATHKFATRDVMLRELERHGGICDCQGSRDTTVYATSADSRGLEAVTQV 695
           G+ HF E L F  T K+   +   + LE H GI +   + + T Y        L      
Sbjct: 65  GLAHFCEHLLFMGTKKYPDENEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDR 124

Query: 696 LAEVTLRPI 722
            A+  + P+
Sbjct: 125 FAQFFIDPL 133


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 772 NSNATACLAASISSADNIGL-NVTSAKT*VTASNPLESALVAYTVVSREPWQSHIPP*RS 596
           N+ + +  A S+ S  +  + NVTS K  ++A+  L  +      +S++P   H P   +
Sbjct: 153 NTASRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAP--ST 210

Query: 595 NSRSITSRVANLWVAPK 545
             R + S + +L+ +P+
Sbjct: 211 RQRDLKSSILSLYASPR 227


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
 Frame = -3

Query: 703 SAKT*VTASNPLESALVAYTVVSREPWQSHIPP*RSNSRSITSRVANLWVAPKLSFSRK* 524
           + K  V+    L S +    V SR+          +  R+++    NL V PK+S     
Sbjct: 215 TCKEEVSTYEGLNSQIELSPVKSRDSQNKSAKNLSTAYRTVSGESRNLMVDPKVSPYGNS 274

Query: 523 QIPLG*ATSYL-GPESITTPAVQNCPNFFSEATLKPL 416
           + PL  +++YL    SI   +  + P   SE T K L
Sbjct: 275 RTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTL 311


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 246 APKWNIRKFSQDGDKLSQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEE 389
           APKW I +F + G   S   G++    P  + +L+L  ++Y L K++E
Sbjct: 605 APKWRINEFDETG---SVYYGALPYNYPEDDVLLDLDGLQY-LVKNDE 648


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 96  TLIFKISNLKNTLTDYVFISPLFVFGSNMSHVTDVKFLVTRLFSLKNS 239
           ++  K   LKN ++D    SP+++ G    H +  ++L    FS+  S
Sbjct: 274 SITIKCKILKNGISDLAMKSPMYLPGPVEPHFSPSRYLTFEGFSVDES 321


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 422 LKSCFREKIWTVLYCWCC 475
           LK C + K W V + +CC
Sbjct: 312 LKMCTKTKYWNVFFPFCC 329


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 294 SQIKGSVTPLPPLSEAMLNLPPVKYSLAKSEETITEVTTLSNGLRVAS 437
           S +  S TP+   +    + P  +YS+  S   IT  T L++   + S
Sbjct: 567 SSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITS 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,332
Number of Sequences: 5004
Number of extensions: 59341
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)