Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H07
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.1  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 639 ACSDYLLKRPLVRVTALAVNPAVLSSRRSGGLKDG*ITFLTANPVSTFDV 490
           A S+   K P V  T  + NPA++S+  S   K+     +  NP STFD+
Sbjct: 85  APSELTSKNPTVSSTTSSANPAIVSNGGSPFYKN---PVVANNPSSTFDM 131


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 831 NFPNDSIGSLMLVLFSVKNQFHLLDVIWMFLILYFPLAWAALSFLCLDIS*FVC-RC*LI 655
           +FP+  IG  +  L  +   F +LD +W F  LYF   +   SF C  I    C    +I
Sbjct: 486 SFPSAIIGGSIPFLVILIELFSILDSLW-FHPLYFMFGF---SFFCFGILVTTCIMVSII 541

Query: 654 LLFHLACSD 628
            ++   CS+
Sbjct: 542 TVYFQLCSE 550


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 816 SIGSLMLVLFSVKNQFHLLDVIWMFLILYF 727
           S+GS++L L    N+  + D I  F I+YF
Sbjct: 825 SLGSIVLQLIVEGNEIAIADSIGRFTIMYF 854


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 433 FSSCNGNFAESFALNLYICVQI 368
           FS+C+GN ++  A NLY  + I
Sbjct: 514 FSACDGNLSDEKAKNLYSSILI 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,333
Number of Sequences: 5004
Number of extensions: 64802
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)