Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H06
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    28   2.0  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   2.6  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   6.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   6.1  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 752 AHTLCLFSRTFLSIYVASLEGSI-VKHIVQK 841
           + TLC+ + T L IY A+L GS+ V++ + K
Sbjct: 437 SETLCIVTSTILDIYGAALGGSVMVENAISK 467


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 52  LSPASDERARSFDI*FALAVFCVKCSVCYLCYCDQN 159
           LSP S++RA S +       + +   +CYLC C+Q+
Sbjct: 36  LSPTSEKRA-SIESGDYTFHYLIDNGICYLCICEQS 70


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 759 LYAYFRGPFYRSTSLPW 809
           L+ YF   FYRS+ +PW
Sbjct: 79  LFTYFVAAFYRSSRMPW 95


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 589 EVDTDNKQNIEDADETQSIEEHVPGLNLEFLRQ 687
           E+D D +  I+D ++T + ++  P L+L+  RQ
Sbjct: 271 EIDEDAENGIDDNEDTTASKDSSPFLDLQSERQ 303


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 569 VRPLQGGKSTPTTNRISKTPTKPN 640
           ++P     ++PT+NR+S  P+ PN
Sbjct: 239 LKPCMPSIASPTSNRLSHAPSTPN 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,899
Number of Sequences: 5004
Number of extensions: 52717
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)