Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H06
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    35   0.074
08_02_0839 + 21693348-21694853                                         29   4.9  
01_06_0347 + 28592552-28593502                                         29   6.4  

>05_01_0055 -
           390371-390457,390637-390715,390804-390856,390951-391105,
           391216-391422,391518-391658,392044-392202,392296-392476,
           393153-393252,393321-393470,393581-393705,394006-394096,
           394364-394472,394558-394657,395143-395307,395401-395506,
           395590-395894,396003-396241,397036-397114,397189-397327,
           398004-398054,398316-398770,398961-399158,399199-399261,
           400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 16/37 (43%), Positives = 26/37 (70%)
 Frame = +2

Query: 746 LTAHTLCLFSRTFLSIYVASLEGSIVKHIVQKDMRSF 856
           L A  L +FSRT++S  +ASL G+ VK ++++D  +F
Sbjct: 802 LLAVALLVFSRTWISDRIASLNGTTVKFVLEQDKAAF 838


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 587 PPAEGALLR--PAPPPTSFVRLDIIFRVNITVLQDLIIIVIVAWWGLFLVS 441
           PP +  LL+  P PPP+S V  D  F+  I+    LII+++     +F VS
Sbjct: 33  PPPQPPLLQLQPPPPPSSPVSFDTAFQSRISPSILLIILILAV---IFFVS 80


>01_06_0347 + 28592552-28593502
          Length = 316

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 602 SVSTSPPAEGALLRPAPPPTSFV 534
           S  T PP+   ++ P PPP+SF+
Sbjct: 27  SAPTPPPSPSLVVAPTPPPSSFL 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,032,859
Number of Sequences: 37544
Number of extensions: 374116
Number of successful extensions: 1201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)