Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H05
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    33   0.052
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    29   0.64 
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         28   2.0  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 115 IFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPR 234
           IF KI++ +IP   + E    +AF D+ P +  H LVIP+
Sbjct: 4   IFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPK 43


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 145 GFLYVIFSQRLYHRLERQFVRVSPHRPPCLY 53
           GFL  + S ++Y R    F+ + P    CLY
Sbjct: 169 GFLQCVLSGKVYDRASYDFINLGPESTVCLY 199


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 333 WTRQASASXVNDGKNGAQSVYHLHIHIL 416
           ++  AS   + DG +  Q+V H+H+HI+
Sbjct: 74  FSASASNIGIQDGVDAGQTVPHVHVHII 101



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 142 IPANFIYEDEQCVAFNDVNPQAPTHVLVIPRXA 240
           + +   Y  +   AF ++ P  P HVLVIP+ A
Sbjct: 12  VGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRA 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,456
Number of Sequences: 5004
Number of extensions: 64888
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)