Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H05
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    78   1e-14
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    64   2e-10
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    36   0.042
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     30   2.1  
08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701     30   2.7  
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    29   3.6  
09_03_0151 - 12794082-12795110                                         29   6.3  

>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +1

Query: 1   TVSXTSHYREFLKILVFHINMADGEVKLAQTAAPGGDTIFGKILRKEIPANFIYEDEQCV 180
           T + +S    F++ +    N        A TA  GG TIF KI+ KEIP+N +YEDE+ +
Sbjct: 8   TAAASSLLLRFVRHIASSTNEEAAAKAAAATADTGGPTIFDKIIAKEIPSNVVYEDEKVL 67

Query: 181 AFNDVNPQAPTHVLVIPR 234
           AF D+NPQAP HVLVIP+
Sbjct: 68  AFRDINPQAPVHVLVIPK 85


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 22/43 (51%), Positives = 36/43 (83%)
 Frame = +1

Query: 106 GDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPR 234
           G  +F KI++KEIP+  +++DE+ +AF D+NPQAPTH+++IP+
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK 234



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/35 (45%), Positives = 25/35 (71%)
 Frame = +2

Query: 251 LSLADDTDEQLLGHLLIVARKVAAQVGLDKTGFRL 355
           LS A++   ++LG+LL VA+ VA Q GL+  G+R+
Sbjct: 242 LSKAEERHVEILGYLLYVAKVVAKQEGLE-DGYRI 275


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 103 GGDTIFGKILRKEIPANFIYEDEQCVAFNDVNPQAPTHVLVIPRXAYSTALA 258
           G   +F +I++   PA  +YED+ C+   D  P +  H L+IP+  + +  A
Sbjct: 70  GQRCVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 360 VNDGKNGAQSVYHLHIHILGGRQ 428
           VN+GK   Q ++H H+H++  R+
Sbjct: 154 VNNGKVAGQVIFHTHVHLIPRRK 176


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 243 IGXPWYHQYMSRSLWVHIIERY-ALFVFVNEICRDFFT*YFPKDCITAWSGSLCEFHLTV 67
           +G  ++++ +S S +  + ERY   +  ++++  D       +DC       + E   TV
Sbjct: 671 VGRDYFNEMVSGSFFQPVSERYMGTWYIMHDLLHDLAESLTKEDCFRLEDDGVKEIPTTV 730

Query: 66  RHVYMKDQNLK 34
           RH+ ++ +++K
Sbjct: 731 RHLSVRVESMK 741


>08_02_0698 - 20151374-20151526,20153024-20153110,20153327-20153701
          Length = 204

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 219 YMSRSLWVHIIERYALFVFVNEICRDFFT*YFPKD 115
           YM R L +H +  Y L +    IC  FF+ + PK+
Sbjct: 143 YMDRFLSLHRLPAYTLIIECTNICMCFFSGFNPKE 177


>01_02_0111 -
           11220179-11220322,11220430-11220497,11220611-11220644,
           11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 190 DVNPQAPTHVLVIPRXAYS 246
           D +P+APTHV ++PR  Y+
Sbjct: 35  DTSPRAPTHVALLPRPLYT 53


>09_03_0151 - 12794082-12795110
          Length = 342

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = +1

Query: 67  DGEVKLAQTAAPGGDTIFGKILRKEIPANFIYEDE-----QCVAFNDVNPQAPTHVLVIP 231
           DGEV L   + PG D IF       I A ++ E         V F     + P H   + 
Sbjct: 183 DGEVALVAVSVPGIDDIFPSPDSSGIAATYLVESRGDLYLAAVVFLGFRAEGPPHKFSVY 242

Query: 232 RXAYSTA 252
           R  +S A
Sbjct: 243 RMDFSAA 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,194,880
Number of Sequences: 37544
Number of extensions: 404401
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)