Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H05
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.90 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   2.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   2.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   6.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 845 FKHFIYXKVVILIHIKLLFLMTFL 774
           + H +Y  V ++I I   FLMTFL
Sbjct: 50  YLHLLYQDVHVMIWIGFGFLMTFL 73


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 126 FPKDCITAWSGSLCEFHLTVRHVYMKD 46
           F K+C       L E H+T+ H Y  D
Sbjct: 87  FSKECYCCRESYLKERHITLHHCYDAD 113


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 126 FPKDCITAWSGSLCEFHLTVRHVYMKD 46
           F K+C       L E H+T+ H Y  D
Sbjct: 87  FSKECYCCRESYLKERHITLHHCYDAD 113


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 758 LKRHHQEKSLRIITLYV 808
           LKRH Q+K  +  TLYV
Sbjct: 21  LKRHFQDKHEQSDTLYV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,411
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)