Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H02
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           29   5.2  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    28   9.0  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 25/88 (28%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
 Frame = +2

Query: 473 PXXVXPPHXXLAPXLXVGXXXXX--PPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXR 646
           P  V PP   + P +           P G     P  G  P      +GP     P + R
Sbjct: 164 PQVVRPPPGQMPPPMRPPQMPIPFQRPPGVPPAFP-GGPPPPPGPFMRGPPP-MGPPQVR 221

Query: 647 XVGXFPXGPPPLXNLXKXXPPFXGGQPP 730
                P GPPP        PPF  G PP
Sbjct: 222 P--GMPGGPPPGMRPGMPPPPFRPGMPP 247


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
 Frame = -3

Query: 581 PRIWGKXXXPP---XGXXXPXPXPEXRGXGXXGAGXRXXXPKTXPXXPGG 441
           P++WG+   PP    G   P P P         AG     P+  P  P G
Sbjct: 41  PQMWGQAPPPPPQMWGQAPPPPQPAYGQPPPAQAGYYGAPPQAAPAVPAG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,020
Number of Sequences: 37544
Number of extensions: 208032
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)