Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_H02
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    34   0.12 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    34   0.12 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    34   0.12 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.7  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    29   6.2  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 28/105 (26%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
 Frame = +2

Query: 488 PPHXXLAPXLXVGXXXXXPPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPX 667
           PP    +P L        PP  G    P+ G  P     +  P            G  P 
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 668 GPPPLXN--LXKXXPPFXGGQPPXGXXXIPXXFPPEXXXA-XRSP 793
            PPP  +       PP  GG PP      P   P +   A  RSP
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 344



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 545 PKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGGQ 724
           P+GG    P+ G        ++   + + P++    G  P G PP     +  PP   G 
Sbjct: 378 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP--TGS 435

Query: 725 PPXG 736
           PP G
Sbjct: 436 PPTG 439


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 28/105 (26%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
 Frame = +2

Query: 488 PPHXXLAPXLXVGXXXXXPPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPX 667
           PP    +P L        PP  G    P+ G  P     +  P            G  P 
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 668 GPPPLXN--LXKXXPPFXGGQPPXGXXXIPXXFPPEXXXA-XRSP 793
            PPP  +       PP  GG PP      P   P +   A  RSP
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 365



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 545 PKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGGQ 724
           P+GG    P+ G        ++   + + P++    G  P G PP     +  PP   G 
Sbjct: 399 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP--TGS 456

Query: 725 PPXG 736
           PP G
Sbjct: 457 PPTG 460


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 28/105 (26%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
 Frame = +2

Query: 488 PPHXXLAPXLXVGXXXXXPPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPX 667
           PP    +P L        PP  G    P+ G  P     +  P            G  P 
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 668 GPPPLXN--LXKXXPPFXGGQPPXGXXXIPXXFPPEXXXA-XRSP 793
            PPP  +       PP  GG PP      P   P +   A  RSP
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSP 350



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 545 PKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGGQ 724
           P+GG    P+ G        ++   + + P++    G  P G PP     +  PP   G 
Sbjct: 384 PRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPP--TGS 441

Query: 725 PPXG 736
           PP G
Sbjct: 442 PPTG 445


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 626 QNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGGQPP 730
           Q P + R  G  P G PP+ NL    PP   G PP
Sbjct: 684 QLPGQPRPAG-LPPGVPPMFNLNAPPPPGIPGYPP 717


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/84 (28%), Positives = 27/84 (32%)
 Frame = +2

Query: 542 PPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGG 721
           P  GG    P  G  P    +T GP     P     +   P  PPP        PP    
Sbjct: 721 PITGGPPPPPPPGGLPP---ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---P 774

Query: 722 QPPXGXXXIPXXFPPEXXXAXRSP 793
            PP G    P   PP    A  +P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAP 798


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/84 (28%), Positives = 27/84 (32%)
 Frame = +2

Query: 542 PPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGG 721
           P  GG    P  G  P    +T GP     P     +   P  PPP        PP    
Sbjct: 721 PITGGPPPPPPPGGLPP---ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---P 774

Query: 722 QPPXGXXXIPXXFPPEXXXAXRSP 793
            PP G    P   PP    A  +P
Sbjct: 775 PPPGGFKGGPPPPPPPGMFAPMAP 798


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 24/84 (28%), Positives = 27/84 (32%)
 Frame = +2

Query: 542 PPKGGXXXXPKXGXXPGKNLLTKGPXKXQNPKKXRXVGXFPXGPPPLXNLXKXXPPFXGG 721
           P  GG    P  G  P    +T GP     P     +   P  PPP        PP    
Sbjct: 304 PITGGPPPPPPPGGLPP---ITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---P 357

Query: 722 QPPXGXXXIPXXFPPEXXXAXRSP 793
            PP G    P   PP    A  +P
Sbjct: 358 PPPGGFKGGPPPPPPPGMFAPMAP 381


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 662 PXGPPPLXNLXKXXPPFXGGQPPXGXXXIPXXFPP 766
           P GPPP  +  +  PPF G  PP      P   PP
Sbjct: 37  PWGPPPPWHRNRGPPPF-GPPPPWDRPPPPWRRPP 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,950,958
Number of Sequences: 27780
Number of extensions: 138925
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)