Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G24
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   1.6  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.6  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    28   2.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   6.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   8.4  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    26   8.4  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 444 ASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTD 557
           A+ + K +++   + M + DP  S TTL S V  ++ +
Sbjct: 602 ATSYNKSIKDMSSSDMAFSDPAYSGTTLRSSVDLNTPE 639


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 432 RLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVKVEQ 578
           ++RD     K+V++ +KT ++ +        L+ E+Q  S  +RVK+++
Sbjct: 323 KIRDEMGIGKKVEDEQKTVVEEIPEMDEEERLDQELQDLSEAERVKLKR 371


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 775 SFSLSWAFLLTDSCGLASN--SIRLTVSFF 692
           SFSL+W + L D+  LAS+  + RL V F+
Sbjct: 96  SFSLTWNYWLNDTIALASHVLATRLVVDFW 125


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 778 NSFSLSWAFLLTDSCGLASNSIRL 707
           N FS+ W  +L ++  L  NS+R+
Sbjct: 389 NEFSIEWQKVLLEAASLGKNSLRM 412


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 373  TQSQAVRTATAVLSVNHAYPVSEMLQTLRSRCRS 474
            T S++VRT    +S    +PVSE +  L +  R+
Sbjct: 1580 TSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRN 1613


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 269 AEGCYKDISTEYFWMGKREVYAEMLAETFXCLHCILKVKRSEQQQPSYL*TMHI--PSPR 442
           A+    D+++   W  +R VYAE+   T     C  + + SE Q+      MH   PSP+
Sbjct: 117 AQNAIDDLNSR--WYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQ 174

Query: 443 CFR 451
             R
Sbjct: 175 LLR 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,477
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)