Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_G23
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 29 0.70
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.92
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.6
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.1
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 28 2.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 6.5
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 26 6.5
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 8.6
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 8.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 8.6
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 29.5 bits (63), Expect = 0.70
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +3
Query: 531 LTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVES 704
+ SA + +S FP+ TV P T +A D +D D A S + ES
Sbjct: 369 ICSAAVDSESVNSADFPHRTVYDPLPTHAIAESISQENVIEDDDDDDDAWVSVDEAES 426
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.92
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 486 VEIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRRDSED 665
VE+ + + + PLTS+ + + S+ S S S+T + A T+ S S
Sbjct: 155 VEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSS 214
Query: 666 QDSADTSSQQVESLRTLQSTGCS 734
S+ +SS S TL S+ S
Sbjct: 215 VVSS-SSSPSSSSSSTLTSSSLS 236
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.3 bits (60), Expect = 1.6
Identities = 30/146 (20%), Positives = 62/146 (42%)
Frame = +3
Query: 297 HLTKFNSWKSVLAKDVQDKGDIYIYNQIRICDRHFEKCYHSQSHRLIANAVPTLNIGFSQ 476
H T +S ++ L + + + Y+ +R + FE+ ++S ++AN + TL FS+
Sbjct: 496 HQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEENKTNKS-AILANQLMTLKSSFSE 554
Query: 477 QQPVEIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRRD 656
E++ D+N + L K+Q+ + S+ R+V + E S
Sbjct: 555 VMSYELKDDDNYNEELDKLVEDVRKKLQEKEEA--------ESSLRSVRERLEIRISLSV 606
Query: 657 SEDQDSADTSSQQVESLRTLQSTGCS 734
D + + ++L++ T S
Sbjct: 607 QSINDLTENKKIKTKTLKSYSGTFAS 632
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 582 NLTVSMPSATRN-VANKAETNQSRRDSEDQDSADTSSQQVESLRTLQSTGCSHKE-T*TR 755
N+T+S + N +AET+ ++D+DS+ + V S + G S +E R
Sbjct: 83 NITISNENNNENDTTEEAETSSGNEAADDEDSSSDAQSSVPSFSEIHD-GMSEEELDKER 141
Query: 756 A*VSHLR 776
++HLR
Sbjct: 142 KTLTHLR 148
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 360 IYIYNQIRICDRHFEKCYHSQSHRLIANAVPTLNIGFSQQQPVEIEV 500
+ +Y Q + + HF K H++ H L+ +A+ L + Q+ EI V
Sbjct: 290 LILYTQSDVKNLHFGKNKHTKPHLLVMDALSNLYVWKILQKRSEISV 336
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 352 LS*TSLARTDFQELNFVKCGYCGLGNRCNGHL 257
L+ +SL T ++ NF C Y + N CNG+L
Sbjct: 466 LTKSSLQHTIVEKSNFTSCSYTAI-NDCNGNL 496
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 411 YHSQSHRLIANAVPTLNIGFSQQQPVEI-EVDENMPTLMQPLTSAQMTKVQQSSHSFPNL 587
Y Q L+ + + L + + I E EN P ++ + + Q +Q +H++ +L
Sbjct: 1406 YLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAVNHAYNDL 1465
Query: 588 TVSM 599
+ M
Sbjct: 1466 LIEM 1469
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = +3
Query: 438 ANAVPTLNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRN 617
+N PTLN+ FSQ +P+ V + L + + +V++ ++ ++ S T+
Sbjct: 23 SNVDPTLNLLFSQSKPIPKPVAKETTVL-----TKKDVEVEE-ANGVEEAAETIESDTKE 76
Query: 618 VANKAETNQSRRDSEDQDSADTSSQQVESL 707
V N ++ ++ + S D + E L
Sbjct: 77 VQNIKPKSKKKKKKLNDSSDDIEGKYFEEL 106
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 255 RKCPLHRFPKPQYPHLTKFNSWKSVLAKDVQDK 353
R+ L +FPK P+L K ++ +L + D+
Sbjct: 272 RRMKLPKFPKEVLPYLVKLRGYQKILYSNPSDQ 304
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +3
Query: 498 VDENMPTLM-QPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRRDSEDQDS 674
V + + TL Q L + K + + F +S TRN K + D ED ++
Sbjct: 794 VPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRNAERKMQRKAYGEDEEDVET 853
Query: 675 ADTSSQQVESLRTLQSTG 728
+ +E + +STG
Sbjct: 854 EAEAKSPLEKITPEKSTG 871
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 8.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +3
Query: 414 HSQSHRLIANAVPTLNIGFSQQQPV-EIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLT 590
H H + + P++N F + P E E + P A+ + +SHS + T
Sbjct: 4 HDDDHTPLLISDPSVNKPFRSRTPSPEREYCSDCPL------QAKGSACNGNSHSLKHET 57
Query: 591 VSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQV 698
S+ NVA + + + ++ DS S++ +
Sbjct: 58 NGASSSNNNVAKSSSHDSFKAKPKNYDSTSNSNEPI 93
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 625 IKLKQINPDEIVKIKIRPIPVL 690
+K K IN E++K+ RPIP+L
Sbjct: 878 VKPKTINKRELLKVFQRPIPLL 899
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 526 SH*LLPK*QKCNSHHTVSQILLLVCHQQLEMSPIKLKQINPDEIVKIKI 672
SH +LP C ++H V QIL+ + HQ + + + +P EI + I
Sbjct: 416 SH-VLPILVACQTNHAVDQILIRLLHQGASVMRLGSRTKDP-EIAAVTI 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,444,611
Number of Sequences: 5004
Number of extensions: 72565
Number of successful extensions: 243
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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