Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_G23
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0671 + 26608953-26609671,26609775-26610495 31 1.3
11_06_0110 + 20212221-20214011,20214072-20214368 30 2.2
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 30 2.2
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 3.9
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 29 3.9
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 29 3.9
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 29 3.9
03_02_0595 + 9709131-9709688 29 3.9
08_01_0601 - 5268520-5271112,5272448-5272950 29 5.2
07_01_1098 - 10083800-10084447,10084523-10084792 29 5.2
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 29 5.2
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 29 6.8
12_02_1194 - 26903802-26904127,26904209-26905091,26905131-269054... 28 9.0
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 9.0
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 28 9.0
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +3
Query: 309 FNSWKSVLAKDVQ-DKGDIYIYN--QIRICDRHFEKCYHSQSHRLIANAVPT 455
F+ +K V+ + Q ++G Y +N +I+ + F +CYHS+ H + A+ V T
Sbjct: 417 FHPYKEVIFLNRQMERGLAYHFNSSKIQYLGKTFPECYHSEVHEMYASFVYT 468
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 199 VTGQTVSHFGAMTSLTGKYANVHCID 276
+TGQ S G +T+LT Y + +C+D
Sbjct: 395 ITGQVPSEIGMLTNLTNLYLHYNCLD 420
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 601 GILTVRFGKLCDDCCTFVIWAEVNGCIRV 515
G + +R+ KLCD C T V+ +EV+ C+ V
Sbjct: 401 GWILLRYKKLCDSCRTDVV-SEVSSCLNV 428
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 583 FGKLCDDCCTFVIWAEVNGCIRVGIFSSTSISTG 482
F C+ C W +VNG R+G+F+S +I G
Sbjct: 452 FNHSCEPNCQLQKW-QVNGKTRLGVFASKAIEVG 484
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 561 QSSHSFPNLTVSMPSATRNVANKAETNQSRRDSEDQDSA 677
+ S S TVS +A RNVANK ++ S+ +++D+ A
Sbjct: 1019 EHSRSASGPTVSAVAAVRNVANKIKSRLSQLNNDDKRGA 1057
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 594 SMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTLQST 725
SMP+A +++ +A + ++Q S +SSQQ++S+ L ST
Sbjct: 330 SMPAAKKSIVERAVLGKEIICFKNQGSPSSSSQQLQSVPLLLST 373
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 393 RHFEKCYHSQSHRLIANAVPTLNIGFSQQQPVEIEVDENMPT 518
R FEK ++ + A A P + F+++ V+IEVD+ T
Sbjct: 372 RKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFST 413
>03_02_0595 + 9709131-9709688
Length = 185
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 507 NMPTLMQPLTSAQMTKVQQSSHSF--PNLTVSMPSATRNVANK 629
N+ TLM+PL + ++++ P++ +S+P A +VA+K
Sbjct: 49 NLDTLMEPLDEPPLLVIEETEFPLPQPSMALSLPMALAHVADK 91
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.1 bits (62), Expect = 5.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 255 RKCPLHRFPKPQYPHLTKFNSWKSVLAKDVQD 350
++C L + P PH K+ W S+ +++D
Sbjct: 147 KECNLEKLPCASKPHRKKYTDWSSLTELEIED 178
>07_01_1098 - 10083800-10084447,10084523-10084792
Length = 305
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 447 VPTLNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVAN 626
VP+ +G+S + P++I+ E T +P +T + P +T T + A
Sbjct: 202 VPSPQLGYSMETPIQID-SEAERTDTKPEIEPDITDPSEDETPVPRITFLGGPRTLSTAR 260
Query: 627 KAETNQSRRDSEDQDS 674
K+ S++ D ++
Sbjct: 261 KSTRPPSKKPKPDPEA 276
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 303 TKFNSWKSVLAKDVQDKGDIYIYNQIRICDRHFEKCYHSQSHRLIAN--AVPTL-NIGFS 473
T N+ V+ + + + ++ +C++ + C H H +I VP G S
Sbjct: 355 TDNNNGTDVITTSASNTENSNVLDENALCEKTSQACIHEVEHVIIPEHLRVPEYEQTGLS 414
Query: 474 QQQPVEIEVDEN 509
Q+PV++ V+++
Sbjct: 415 VQEPVQLVVEDD 426
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 103 HARLQLFEQDFQGFDSCLRSC---PFAFPHEILARVTGQTVSHFGAMTSLTGKYANVHCI 273
HA L + FD C R+C P+A +I + F T++ KY + + +
Sbjct: 155 HAFLTMSAVSLLIFDECHRACGSHPYARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMV 214
Query: 274 DFLN 285
DF N
Sbjct: 215 DFDN 218
>12_02_1194 -
26903802-26904127,26904209-26905091,26905131-26905427,
26905638-26905709
Length = 525
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 489 EIEVDENMPTLMQPLTSAQMTKVQQSSHSFPNLTVSMPSATRNVANKAETNQSRR-DSED 665
E+ DE+ P + Q + S + + Q+SS + V + ++ + R + ED
Sbjct: 339 EVIYDEDEPRV-QLVGSEENMESQESSDFAAAVRVVLSQTNEHMTEEKRKKSLRLLEKED 397
Query: 666 QDSADTSSQQVESLRTLQSTGCS 734
+ AD ++++ E+L + GC+
Sbjct: 398 KKVADAAAERKEALNAFINKGCA 420
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 174 CERTRTQTRVESLKILLEELKARVGPFAAVGKLTADKHATRRLKI 40
CE RT+ ++E K +LE+ + +V + K+ A +++ L +
Sbjct: 126 CEECRTEMQIEKEKSILEKSQVKVSTISVGSKVKAANVSSKDLNV 170
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 297 HLTKFNSWKSVLAKDVQDKGDIYIYNQIRICDRHFEKCYHSQSHRLIANAVPTLN 461
HL + S L KD+ K D+Y N IR+ R + +Q R + A+ N
Sbjct: 118 HLLQVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKN 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,888,033
Number of Sequences: 37544
Number of extensions: 460656
Number of successful extensions: 1278
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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