Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G23
         (918 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subun...    31   5.9  
AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.                 31   5.9  
AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription ...    31   5.9  
AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.     31   5.9  

>BC146792-1|AAI46793.1| 2624|Homo sapiens B double prime 1, subunit of
            RNA polymerase III transcription initiation factor
            protein.
          Length = 2624

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +3

Query: 399  FEKCYHSQSHRLI---ANAVPT-LNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQS 566
            FE  Y  +S+ L     N  P  + +G    +PV  +++E M  L   +    +  +   
Sbjct: 1881 FESDYEEESYHLAPEEVNKAPVFVPVGLRSPEPVSAQIEETMEELEITVNVPDVGCIAVV 1940

Query: 567  SHSFPN--LTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTL 716
             H  PN  +T        N++   E   S    ++  + D S++   +L T+
Sbjct: 1941 EHELPNTDVTTEEMKQEENLSVPFEMTTSEHIQDEPGTNDGSTEAAITLLTM 1992


>AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.
          Length = 2187

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +3

Query: 399  FEKCYHSQSHRLI---ANAVPT-LNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQS 566
            FE  Y  +S+ L     N  P  + +G    +PV  +++E M  L   +    +  +   
Sbjct: 1881 FESDYEEESYHLAPEEVNKAPVFVPVGLRSPEPVSAQIEETMEELEITVNVPDVGCIAVV 1940

Query: 567  SHSFPN--LTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTL 716
             H  PN  +T        N++   E   S    ++  + D S++   +L T+
Sbjct: 1941 EHELPNTDVTTEEMKQEENLSVPFEMTTSEHIQDEPGTNDGSTEAAITLLTM 1992


>AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription
            factor-like nuclear regulator protein.
          Length = 2254

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +3

Query: 399  FEKCYHSQSHRLI---ANAVPT-LNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQS 566
            FE  Y  +S+ L     N  P  + +G    +PV  +++E M  L   +    +  +   
Sbjct: 1881 FESDYEEESYHLAPEEVNKAPVFVPVGLRSPEPVSAQIEETMEELEITVNVPDVGCIAVV 1940

Query: 567  SHSFPN--LTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTL 716
             H  PN  +T        N++   E   S    ++  + D S++   +L T+
Sbjct: 1941 EHELPNTDVTTEEMKQEENLSVPFEMTTSEHIQDEPGTNDGSTEAAITLLTM 1992


>AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.
          Length = 2627

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
 Frame = +3

Query: 399  FEKCYHSQSHRLI---ANAVPT-LNIGFSQQQPVEIEVDENMPTLMQPLTSAQMTKVQQS 566
            FE  Y  +S+ L     N  P  + +G    +PV  +++E M  L   +    +  +   
Sbjct: 1884 FESDYEEESYHLAPEEVNKAPVFVPVGLRSPEPVSAQIEETMEELEITVNVPDVGCIAVV 1943

Query: 567  SHSFPN--LTVSMPSATRNVANKAETNQSRRDSEDQDSADTSSQQVESLRTL 716
             H  PN  +T        N++   E   S    ++  + D S++   +L T+
Sbjct: 1944 EHELPNTDVTTEEMKQEENLSVPFEMTTSEHIQDEPGTNDGSTEAAITLLTM 1995


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,842,007
Number of Sequences: 237096
Number of extensions: 2525025
Number of successful extensions: 13519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13519
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11936890730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)