Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_G21
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 34 0.031
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 34 0.031
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 32 0.12
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 30 0.50
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.87
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 29 1.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 28 2.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 4.6
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 27 4.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.6
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 26 6.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 8.1
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 8.1
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.9 bits (74), Expect = 0.031
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Frame = -1
Query: 841 IGTHGRISSAVT*ETAPGPLSDRRXGDSKCSTLVNTTETSPIS-----RVVFWPATL*SS 677
I TH R +++ + ++P P G S +T NTT T+P+S + +P+++ S
Sbjct: 1607 IATHSRYNASFS--SSPPPQPGNSSGMSAMNT--NTTSTTPVSLSELSEITLFPSSV-SP 1661
Query: 676 VHDRELCDGSTTLSRARDSLPPLHRR----TYDEIPENF*LKLNQDHSRFY 536
+ + +T L + + HRR TYDE N +N D +R +
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVH 1712
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.9 bits (74), Expect = 0.031
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Frame = -1
Query: 841 IGTHGRISSAVT*ETAPGPLSDRRXGDSKCSTLVNTTETSPIS-----RVVFWPATL*SS 677
I TH R +++ + ++P P G S +T NTT T+P+S + +P+++ S
Sbjct: 1607 IATHSRYNASFS--SSPPPQPGNSSGMSAMNT--NTTSTTPVSLSELSEITLFPSSV-SP 1661
Query: 676 VHDRELCDGSTTLSRARDSLPPLHRR----TYDEIPENF*LKLNQDHSRFY 536
+ + +T L + + HRR TYDE N +N D +R +
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVH 1712
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 157 KPLIDFDECLRDSPKFREQLETEEANIDGLEQ--KLDKVLKACSIMIETGKTYMNHRGTF 330
K L + +RDS K +E+LETE+ N+ G Q +L L ++ +++++
Sbjct: 471 KALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEIM 530
Query: 331 TNALWDLTGSFSEDPTVMAPLNRMA 405
D + SFS V L+R+A
Sbjct: 531 LTQTSDTSRSFSFLNFVAIWLSRLA 555
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 550 DLDLALIRNSQVSRHKSADVEEVVNLLLATRSCFRHTALDHVQKITMLQARKRHEILATF 729
DL AL+ S + + +++EE+++L S RH L + A +E+LA +
Sbjct: 706 DLLDALLMESLSRKVEISEIEEIISLCPKNSSIIRHALLAKLVLFPENTADSLNEVLAAY 765
Query: 730 LSYLQAC 750
+ L C
Sbjct: 766 KNTLDLC 772
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.1 bits (62), Expect = 0.87
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +3
Query: 600 RRCRGGSESLARDKVVLPSHSSRSCTEDHNVAGQKTTRDIGDV-SVVFTSVLHLLSPXRR 776
RR G RD + +PS + N++ T D+GD TS+ ++ P
Sbjct: 72 RREGGMGSGYQRDAIPIPSEPPFTAHVG-NLSFDLTENDLGDFFGEGVTSIRLVIDPLTE 130
Query: 777 SDRGPGAVSQVTADEIRPCVPIXNXD 854
RG G V TAD + + + D
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGED 156
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 28.7 bits (61), Expect = 1.1
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Frame = +1
Query: 160 PLIDFDECLRDSPKFREQLETEEANIDGLEQKLDKVLKACSIMIETGKTYMNHRGTFTNA 339
PL D D C RD P F+E L + + LD AC + Y+ ++
Sbjct: 63 PLSDGDACSRDVPYFQE-LSVNAIRVYAVNASLDH--SACMQAFQDAGIYV-----LSDL 114
Query: 340 LWDLTGSFSEDPTVMAPL-NRMAHALQEMTKFHSILLDQVSRTVIKNLT-----AFIRVD 501
S DPT L +R + + + ++L VI+N T AF++
Sbjct: 115 AQPYEAISSSDPTWTVDLFSRYTEVVDSLAPYDNMLGFIAGNEVIQNNTNTNAAAFVKAA 174
Query: 502 IKGVK 516
++ VK
Sbjct: 175 VRDVK 179
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 442 LLDQVSRTVIKNLTAFIRVDIKGVKESKHHF 534
L V R V+KN+ F+ + +++SKH F
Sbjct: 929 LFSSVVRIVLKNVREFVLIGNSSIQKSKHEF 959
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +1
Query: 322 GTFTNALWDLTGSFSEDPTVMAPLNRMAHALQEMTKFHSILLDQVSRTVI-----KNLTA 486
G F + D + + S D + + LNR + A +++ K L+D + +++TA
Sbjct: 198 GDFEQVIKDTSEALSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTA 257
Query: 487 FIRVDIKGVKESK 525
+ +K V E K
Sbjct: 258 TVERLLKKVAEKK 270
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 751 STLVNTTETSPISRVVFWPATL*SSVHDRELCDGSTTLSRARDSLPPLHR--RTYDEIPE 578
+ L+N +E VF+ + SS+H ++L TTL DSL +R R + +
Sbjct: 427 TALINPSELDFTKSFVFYDLSSASSIHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFAN 486
Query: 577 NF 572
F
Sbjct: 487 RF 488
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 121 YIKKERQIIDKMKPLIDFDECLRDSPKF 204
Y ++E I+ M P+I +RDSP F
Sbjct: 48 YEQEEDDILSLMNPMITMHAWIRDSPSF 75
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 675 TEDHNVAGQKTTRDIGDVSVVFTSVLHLLSPXRRSDR 785
TED NV KT I D + S + LL+ +DR
Sbjct: 331 TEDRNVIDVKTEIKIRDFTPTLRSAIELLTSGTHADR 367
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 212 CSLNFGESLRHSSKSING 159
CS N G+S+ SKSING
Sbjct: 553 CSYNTGDSIPQVSKSING 570
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 595 KSADVEEVVNLLLATRSCFRHTALDHV 675
KS++ E + LLL CF+ A DH+
Sbjct: 2175 KSSNPEALDGLLLPLNKCFQKVARDHI 2201
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 76 LEEKYCEYL-ALFNVKYIKKERQIIDKMKPLIDFDE 180
LEEKY EYL L ++ +K ++ + K + ++ DE
Sbjct: 889 LEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDE 924
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 642 PCREQEIHYLLYIGGLMT 589
P R++ I YL+Y GGL T
Sbjct: 902 PFRQEGIKYLMYTGGLST 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,328
Number of Sequences: 5004
Number of extensions: 67092
Number of successful extensions: 248
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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