Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G20
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   1.4  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   1.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.8  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 386 VSRDIRTTTEARRPGTARNTRRPK 315
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 386 VSRDIRTTTEARRPGTARNTRRPK 315
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -2

Query: 524  SALLAKELELDHSRALSKSRLSSWXXXXXXXXXXAPARHPSGRCRAVSRDIRTTTEARRP 345
            +ALL+++ EL H  ++  S+ +SW             R     C   S ++ +  EAR  
Sbjct: 1605 AALLSQKNELSHENSILGSKTTSWELDSTEGSERMRKRLMP--CLLQSSELDSKLEARSS 1662

Query: 344  GTARN 330
            G  RN
Sbjct: 1663 GARRN 1667


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 372 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 274
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 536 SWRLSALLAKELELDHSRALSKSRLSSW 453
           SW LS ++ KEL++       +  L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,761
Number of Sequences: 5004
Number of extensions: 40177
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)