Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_G20
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 31 0.83
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.83
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 3.4
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 4.4
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 29 5.9
12_02_1275 - 27482784-27483272 28 7.8
06_03_1310 + 29238644-29240260 28 7.8
06_03_0685 - 23499779-23500204 28 7.8
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 7.8
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 7.8
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -2
Query: 419 PARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPT-ELSACCRERSETPRHRNKPSRP 243
P RH R IR + + P R+ R P + + R RS PR R P R
Sbjct: 297 PIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRR 356
Query: 242 VWS 234
+WS
Sbjct: 357 MWS 359
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.83
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 211 WKWCGLRRDQTGREG 255
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 185 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLG 349
SSS S+Y N +G +T +++ SG +S S +S+ D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 306 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 214
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 404 SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRER 282
SG + S+ IRT+ RP T + R PK +SA R +
Sbjct: 26 SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNK 66
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 208 QWKWCGLRRDQTGREG 255
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = -2
Query: 419 PARHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRH----RNKP 252
PA+ P +C A + ++A+ T TRRP + RS P H R P
Sbjct: 339 PAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGR--TPLAPHRSPLPHHMPPRRTPP 396
Query: 251 SRPVWSRRSPHH 216
+ P S +P H
Sbjct: 397 TPPPPSSPTPSH 408
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 228 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAP 353
P R R RR+ P GR+ LP ++CR R P R P
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHGLP 82
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 28.3 bits (60), Expect = 7.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 544 LGHHGDXRRCWPKSWSLTIAGHLASRD 464
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 398 RCRAVSRDIRTTTEARRPGTARNTRRPKPTELSAC 294
R RA S+D R T + RP T R P P AC
Sbjct: 1024 RRRAPSQDWRYTPDVPRPRTRGRRRGPSPAIQKAC 1058
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,196
Number of Sequences: 37544
Number of extensions: 332065
Number of successful extensions: 1095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -