Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G18
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    30   0.39 
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   2.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   6.3  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    26   6.3  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   8.4  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -2

Query: 514 ELTAHLMVSGTY*KLLQSRPDLSHFSVKLTHISM 413
           +L++ L++ G Y  LL++ P+LS+   KL HIS+
Sbjct: 418 DLSSSLLILGRYPFLLRAYPELSNLYHKLLHISI 451


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 670 CTMTSNFKLYTKMTLQEQDRASHEPVLSQNFKSVS 566
           CT T   K Y K+ LQ     +H P   + FK VS
Sbjct: 124 CTDTEIKKSYKKLALQLHPDKNHAPSADEAFKMVS 158


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 268 IQGVMKTFSKPKRKEANI*S*QKQSSLTNHEFIYIFVCTYLFSRSHLYI 122
           + G   + S P +K+++  S   + +LT+H+  Y+ +C Y   RS +YI
Sbjct: 260 LSGSPSSSSSPLKKDSSSNSLTYEPALTDHKPQYLVLCVY---RSLIYI 305


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 667 TMTSNFKLYTKMTLQEQDRASHEPVL 590
           T+TS   +Y   T+Q + R SH PVL
Sbjct: 421 TVTSASVVYHLATMQSRKRKSHSPVL 446


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 311 VFKNGSQGCLNDVLYTGCDENVLKAETQR 225
           V+K+G +GCLN   Y G   N L  E ++
Sbjct: 40  VYKSGKEGCLNLENYDGSFLNYLLHEEEK 68


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 610 ASHEPVLSQNFKSVSIIHSTL 548
           ASH+P L +  + ++IIHST+
Sbjct: 235 ASHQPRLEKEARLLNIIHSTI 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,413
Number of Sequences: 5004
Number of extensions: 74738
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)