Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G17
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine re...    28   7.7  

>AF039047-6|AAB94226.1|  186|Caenorhabditis elegans Hypothetical
           protein K11D12.6 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 747 ILENICEKTVLIKLPKCSNTIVVNYPY 667
           + +NIC+  V +   KCSNT  + Y Y
Sbjct: 14  VSQNICDSPVDLGTAKCSNTSSIRYHY 40


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 421 GPHYVEGIGEGLCPAV 468
           GPH ++GIG G  PAV
Sbjct: 221 GPHKIQGIGAGFAPAV 236


>AF016449-5|AAG23995.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein185 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 298 IILIRSPYEFVFGFCISETESASFESLRFILLGFQGIL 185
           + +I +P   +  FCI +  S S ESL++ LL +  ++
Sbjct: 26  VSVISTPIHIIAIFCILKRSSESLESLKWSLLNYHSMV 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,453
Number of Sequences: 27780
Number of extensions: 309548
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)