Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G16
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    50   4e-07
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    41   3e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    38   0.003
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    30   0.51 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.67 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.67 
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    27   2.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    26   8.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   8.2  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +3

Query: 258 TRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKIS 437
           T ++I ++   F+ FD  +DG +   E+  +M  LG   T   L+ MI+EVD DG+  I 
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66

Query: 438 FREFL-LIYRKAR 473
           F EFL ++ RK +
Sbjct: 67  FTEFLTMMARKMK 79



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
 Frame = +3

Query: 237 YTEFHEFTRKEIK----QYEV--TFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAM 398
           +TEF     +++K    + EV   F  FD+  +G++ + E+  ++  LG   +   +  M
Sbjct: 67  FTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADM 126

Query: 399 ISEVDEDGDNKISFREF 449
           I E D DGD  I++ EF
Sbjct: 127 IREADTDGDGVINYEEF 143


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +3

Query: 225 FVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMIS 404
           FV V TE     R  +++ +  F  FD+   G + L  ++R+ + L        L+AMI 
Sbjct: 95  FVRVMTE-KIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIE 153

Query: 405 EVDEDGDNKISFREFLLI 458
           E D D D +I+ +EF+ I
Sbjct: 154 EFDLDQDGEINEQEFIAI 171


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +3

Query: 222 KFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFL---DLTEVKRMM--ERLGAPQTHLG 386
           +F+N  + F     KE K  +  F  +D  RDG++   +L  V +MM    L   Q    
Sbjct: 77  EFINSLSVFSVHGNKEEK-LKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135

Query: 387 LKAMISEVDEDGDNKISFREF 449
           +   I EVD+D D KISF EF
Sbjct: 136 VDKTIMEVDKDRDGKISFEEF 156



 Score = 33.1 bits (72), Expect = 0.054
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 255 FTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKI 434
           F+ +EI++    F K D  + G +D  E   +      P        + S VDEDG   +
Sbjct: 18  FSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA----SRLFSVVDEDGGGDV 73

Query: 435 SFREFL 452
            F+EF+
Sbjct: 74  DFQEFI 79


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 291 FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKISFREF 449
           + K ++ +   LDL +V RM + L    +   L+    + D D   K+SF EF
Sbjct: 303 WEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/99 (21%), Positives = 40/99 (40%)
 Frame = +3

Query: 180 NDKLEEGVEIKPKYKFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMER 359
           +  +E   ++ P     N   EFH+   +  +Q+E    + +  +    +L + KR + +
Sbjct: 336 SSNVESSEDVDPASLLQN--EEFHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQ 393

Query: 360 LGAPQTHLGLKAMISEVDEDGDNKISFREFLLIYRKARA 476
               +  L L   I E D  G+ ++   E      KA A
Sbjct: 394 QQLKEQEL-LMQKIKETDRSGNKRLMLLETQHSLLKAEA 431


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 243 EFHEFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDG 422
           ++ E T +EI      FNK D    G+LD     +  E      ++  ++  I EV+ D 
Sbjct: 9   KYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVNVDS 67

Query: 423 DNKISFREFLLIYRKARAG 479
             ++   +F+ I+   + G
Sbjct: 68  SGRVEPEDFVGIFNVLKKG 86


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +3

Query: 252 EFTRKEIKQYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNK 431
           EFTRK     E + +  D G     ++ +VK +   L  P+       ++S + E+   K
Sbjct: 266 EFTRKSSSSVEFSDHSQDSGDPSQQNILQVKNVQAVLSIPEAESYKAQLLSSIAEEQKKK 325


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 201  VEIKPKY-KFVNVYTEFHEFTRKEIKQYEVTFNKFDEGRD 317
            V+   KY + + V T +   +  E K+Y + FN  DE  D
Sbjct: 1199 VDFSEKYTQLIPVITTYTHLSEVENKKYSLRFNSIDEALD 1238


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 673 GGSNLKKK-LRYSNTNRIENDIVICLVC 753
           G  +LK++ L+YSN  +  ND  +C+ C
Sbjct: 149 GSESLKERSLKYSNRLQASNDTGVCVKC 176


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 485 GNGFGFGRFS*INRNQCR 538
           GN FGFG F  +NR Q R
Sbjct: 93  GNNFGFGGFPRMNRRQRR 110


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 577 RKLKNSLKVTSFTTRLFKNKKRSVGKQRKELSGGSNLKKKLRYSNTNRIEN 729
           R LK+     S   ++  +K+R  GK+RK +S   +       SN N IE+
Sbjct: 550 RPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSAS-----SNFNEIES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,966
Number of Sequences: 5004
Number of extensions: 60048
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)