Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G15
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    29   0.71 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    28   2.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   5.0  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    26   6.6  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 508  WHKGKQKNFMGRCVIDLSRLEKEKTHDIWQELECGYGFIHMLITVXGSQLTRGLAVDN 681
            W  G + + +G CVID   L++++  +    L+   G +++ IT+    + R     N
Sbjct: 1108 WDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPLDSKQGVLYLRITLSPKWVLRSKRAGN 1165


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +3

Query: 78  RNIGN*VLSACTPKQI 125
           RNIG+ +LSAC PK+I
Sbjct: 130 RNIGDDILSACIPKEI 145


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 542 LPIKFFCFPLCQQGYL*IVFLVQI-YIESLTPRRLC 438
           LP+K + FPLC+      + LV I Y ++L    LC
Sbjct: 486 LPLKGYLFPLCEPNLQSAMLLVPITYSDALLDDYLC 521


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 907 GFPRPGXWSLIPXVIQXLKR 848
           G P P  WS +P V+Q +K+
Sbjct: 145 GLPIPAVWSKMPAVLQTMKK 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,766,274
Number of Sequences: 5004
Number of extensions: 80710
Number of successful extensions: 207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)