Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G13
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    68   1e-12
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   2.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   7.4  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   7.4  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   9.7  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    25   9.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.7  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 15/110 (13%)
 Frame = +2

Query: 266 NYEYLIESYGDLVVPVADCN-KISYNSQCKCEMKMKDFIHYLRKSERTQL---------- 412
           NYEYL E+YG + VP+A CN K  Y SQ +  + +K  +H LR  E+ QL          
Sbjct: 120 NYEYLEENYGTIPVPLAYCNEKDRYGSQRRETVPLKSALHELR-DEQVQLQCRQAPSNQA 178

Query: 413 ---LYLKDWHL-KNVRPTDNFYEVPKVFGLDWLNEYAQDXNEDDLDLSIL 550
              LY KD HL +++ P D  Y  P +F  DWLN Y  D   DD   + L
Sbjct: 179 LKSLYAKDMHLFRHLDPADFPYSTPDIFADDWLNAYVIDCESDDFRFAYL 228


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +2

Query: 362 KMKDFIHYLRKSERTQLLYLKDWHLKNVRPTDNFYEVPKVFGLDWLNEYAQDXNEDDLDL 541
           + KD    +++   + +LY +D   +   PT N   + ++ G  W NE AQ   +   DL
Sbjct: 8   EQKDQKSSVKRPLNSFMLYRRDRQAEI--PTSNHQSISRIIGQLWRNESAQ-VKKYYSDL 64

Query: 542 SILDHKIH 565
           S L+ + H
Sbjct: 65  SALERQKH 72


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 449 PTDNFYEVPKVFGLDWLNEYAQDXNEDD 532
           P  NF+    V  +++ +EY++  NEDD
Sbjct: 47  PDLNFFSTQNVMQMNFEDEYSEFSNEDD 74


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 269 YEYLIESYGDLVVPVADCNKISYNSQCKCEMKMKDFIH 382
           Y+ +IE+   L + V D + I+Y ++ +CE  ++DF H
Sbjct: 27  YQQVIEALS-LGIRVID-SAITYRNEKECEQAIQDFCH 62


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +2

Query: 311 VADCNKISYNSQC---KC----EMKMKDFIHYLRKSERTQLLYLKDWHLKNVRPTDNF 463
           V D NKI   S     KC    E  + D + +L+K E  ++LY KD+ +       NF
Sbjct: 340 VLDANKIYSESVVDLDKCRTLVEETIADHLQFLQKCETDRVLYYKDFFMDLSTIISNF 397


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 506 YAQDXNEDDLDLSILDHKIHGT*LTLGD*TKXVFCGL 616
           YA     DD+  +I     + T L  GD TK V CGL
Sbjct: 248 YAHQDKRDDVKANI-----YSTALRFGDNTKPVLCGL 279


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 374 SLSFSFHICIVNCKIFY-YNLQQVP 303
           SL+  F + ++ CK+FY  N Q +P
Sbjct: 197 SLNSLFQVILLECKLFYDLNCQDIP 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,521
Number of Sequences: 5004
Number of extensions: 51700
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)