Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G13
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    78   7e-15
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485...    36   0.039
03_04_0249 - 19341182-19342237,19342284-19342505                       29   5.8  
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    28   7.7  

>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
 Frame = +2

Query: 152 IEYNTFFEQFMLRNVPCILKNVSFNWECSKKWIL-----RNQINYEYLIESYGDLVVPVA 316
           + Y  F ++FM  N+P +L  ++ +W     W L     R   + ++L  S+   +V VA
Sbjct: 26  LSYAEFVDRFMRPNLPVVLTGLTSSWRSCHDWTLAAAADRRAPDLDFLARSFPSPLVQVA 85

Query: 317 DCNKISYNSQCKCEMKMKDFI-HYLRKSERTQ----LLYLKDWHLKNVRPTDNFYEVPKV 481
           DC+   ++ Q + EM M++F+ H+   S        LLYLKDWH     P    Y  P  
Sbjct: 86  DCSSREFSDQKRLEMSMREFVDHWAASSSNGDSDGSLLYLKDWHFVKEYPGYVAYTTPTF 145

Query: 482 FGLDWLNEYAQDXNEDDLDLSILDH 556
           F  DWLN Y  D +    D  I +H
Sbjct: 146 FADDWLNMYL-DSHPIHRDSDIANH 169


>03_03_0206 +
           15447054-15447181,15448243-15448298,15448373-15448515,
           15448630-15448827,15448901-15449100,15449585-15449684,
           15449769-15450350,15450434-15450556,15451028-15451108,
           15451188-15451495,15451577-15451816,15452261-15452345,
           15452429-15452606,15453053-15453227,15453826-15453982
          Length = 917

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +2

Query: 197 PCILKNVSFNWECSKKWILRNQINYEYLIESYGDLVVPVADCNKISYNSQCKCEMKMKDF 376
           P +L  ++  W    KW  +       L   YG+  VP     +IS  S  K +MK+KD+
Sbjct: 109 PVLLTKLAETWPARTKWTAQQ------LTHDYGE--VPF----RISQRSPQKIKMKLKDY 156

Query: 377 IHYLRKSERTQLLYLKDWHLKNVRPT-DNFYEVPKVFGLDW 496
           + Y+        LY+ D       PT    Y VP +F  D+
Sbjct: 157 VFYMELQHDEDPLYIFDDKFGESAPTLLEDYSVPHLFQEDF 197


>03_04_0249 - 19341182-19342237,19342284-19342505
          Length = 425

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 428 WHLKNVRPT-DNFYEVPKVFGLDWLNEYAQDXNED 529
           W   N  P  ++ +++ K+ G+DW+    QD NED
Sbjct: 112 WRDINETPEFESLHDLFKIVGIDWIVTLKQDYNED 146


>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 246 HFFEHSQLKLTFFNIHGTFLNINCSKKVLYSISFSVISRY 127
           +FF  S + +TFF I G+ + +N  +   YSI F+    Y
Sbjct: 330 YFFALSVIYMTFFVIFGSLIGLNFFRLNDYSIQFAFFFIY 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,623
Number of Sequences: 37544
Number of extensions: 263777
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)