Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G11
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    31   1.4  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    31   1.4  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    29   4.4  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    29   4.4  
Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 145 LAFKQKKHEGNYFIRVIV-LWNRCIREAMLSRWRNNFTTG*MRHRAN 282
           L FKQK    +    + +  WN    E +L  W+ NFT     H+AN
Sbjct: 575 LRFKQKPGRNSMKTGLDMDAWNETAAEQVLQAWQRNFTKSLYNHKAN 621


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 339 PFKIISFNSNLPLLQFMLTIGSVPHLP 259
           PF + +FN NLPL+  +L  G+  +LP
Sbjct: 367 PFMLAAFNQNLPLMTLLLDAGADVNLP 393


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 339 PFKIISFNSNLPLLQFMLTIGSVPHLP 259
           PF + +FN NLPL+  +L  G+  +LP
Sbjct: 365 PFMLAAFNQNLPLMTLLLDAGADVNLP 391


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 759 YTNHVHPKECCYHPSVHDESCQCT*ILTGTRYSVAVLPMTR 637
           YTNH   ++CCY  +++D +     +++    SV+V  ++R
Sbjct: 656 YTNHAELQQCCYDSTLNDLNVLTQGLISAADESVSVNIVSR 696


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 759 YTNHVHPKECCYHPSVHDESCQCT*ILTGTRYSVAVLPMTR 637
           YTNH   ++CCY  +++D +     +++    SV+V  ++R
Sbjct: 704 YTNHAELQQCCYDSTLNDLNVLTQGLISAADESVSVNIVSR 744


>Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical
           protein C07A4.2 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 636 IQAPYLCS*TCNISPWRSLKFGKYVYTAKVANKNTTEINVSIPLVSMS 493
           IQ+ YL     N S WR + F K  +  ++  KN+ +I V + +V  S
Sbjct: 327 IQSFYLEGIGYNYSSWRPMSFFKTGHFTQLIWKNSRKIGVGVSIVKSS 374


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 691 TLTGFVVYTWMIATFFWMNVICINVCRSVLNASRWR 798
           T T  +V  +  A  FW NV CIN+ +S    +R R
Sbjct: 182 TATPKIVKAFEQAVAFWQNVTCINIMQSSTAINRIR 217


>Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical
           protein F58B4.1a protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 691 TLTGFVVYTWMIATFFWMNVICINVCRSVLNASRWR 798
           T T  +V  +  A  FW NV CIN+ +S    +R R
Sbjct: 182 TATPKIVKAFEQAVAFWQNVTCINIMQSSTAINRIR 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,593,739
Number of Sequences: 27780
Number of extensions: 462025
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)