Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G10
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0520 - 18495118-18498237                                        118   8e-27
01_01_1127 + 8930593-8932681,8932812-8933401                          104   8e-23
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962...    37   0.019
07_03_0944 + 22787933-22789906                                         28   8.7  

>10_08_0520 - 18495118-18498237
          Length = 1039

 Score =  118 bits (283), Expect = 8e-27
 Identities = 78/203 (38%), Positives = 97/203 (47%), Gaps = 15/203 (7%)
 Frame = +2

Query: 176 FLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPAAK-----RKKTXXXX 340
           FL    P  YVAG+GRGATGFTTRSDIGPAR A D+ D   A  AA      R K     
Sbjct: 110 FLNSKPPPNYVAGLGRGATGFTTRSDIGPARAAPDLPDRSAAAAAAPAVGRGRGKPPGDD 169

Query: 341 XXXXXXXXXXXX---------FSGYSGSLFSKDPYDKDDAEADAIYESIDXXXXXXXXXX 493
                                F G    LFS   YD DD EADA++ESID          
Sbjct: 170 DGDDDGGDEEKGYDENQKFDEFEGNDAGLFSNADYDDDDREADAVWESIDQRMDSRRKDR 229

Query: 494 XXXXXXXXXXXXXQERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAEKF 673
                           PKI +QF+DLKR+L  +S  EW +IPE+GD   R ++  R E F
Sbjct: 230 REARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKK-RFESF 288

Query: 674 TPLPDSVLSR-NLGGESSSSIDP 739
            P+PD++L +     E  +++DP
Sbjct: 289 VPVPDTLLEKARQEQEHVTALDP 311


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score =  104 bits (250), Expect = 8e-23
 Identities = 67/192 (34%), Positives = 85/192 (44%), Gaps = 4/192 (2%)
 Frame = +2

Query: 140 PPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPA--A 313
           PP       +  FL    P  YVA +GRGA GFTTRSDIGPA     +   R  PP    
Sbjct: 16  PPPPAACAARYDFLNSKPPPNYVARLGRGAAGFTTRSDIGPA-----MGRGRGKPPGDDG 70

Query: 314 KRKKTXXXXXXXXXXXXXXXXFSGYSGSLFSKDPYDKDD--AEADAIYESIDXXXXXXXX 487
                                F G    LFS   +D DD   EADA++E ID        
Sbjct: 71  DGDGGGDEEEKGYDENQKFDEFEGNDAGLFSNAGHDDDDDDREADAVWEGIDRRMDSRRK 130

Query: 488 XXXXXXXXXXXXXXXQERPKIQQQFSDLKRELKTVSEDEWAAIPEVGDARNRKQRNPRAE 667
                             PKI +QF+DLKR+L  +S  EW +IPE+GD   R+ +  R E
Sbjct: 131 DWREARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRRFE 190

Query: 668 KFTPLPDSVLSR 703
            F P+PD++L +
Sbjct: 191 SFVPVPDTLLEK 202


>06_03_0138 +
           17093196-17093325,17095704-17095804,17096224-17096292,
           17096403-17097650,17097763-17097871,17099459-17099655,
           17099732-17099842,17099927-17100079
          Length = 705

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 642 GNSATLAPRSLRRYQTASCLGTWGENRPPQSTQGSGLASMMPGVVTPGMLTP 797
           G S    P  L +YQ  + L +W  +  P S  G+GL   MP +  PG  TP
Sbjct: 174 GQSGIQMPPPLPQYQPGASLPSWNSSPMPSSANGAGLT--MPPMYWPGFYTP 223


>07_03_0944 + 22787933-22789906
          Length = 657

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 602 EWAAIPEVGDARNRKQRNPRAEKFTPLPDSVLSRNLGGESSSSIDPGVWTSIYDAWCSDS 781
           +W   P V    N ++R+PR   +T +P     R  G  S  S +      ++++W   S
Sbjct: 252 DWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCE--FSHGVFESWLHPS 309

Query: 782 R 784
           +
Sbjct: 310 Q 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,941,661
Number of Sequences: 37544
Number of extensions: 427029
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)