Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_G09
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 98 7e-21
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 6e-08
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 29 4.9
12_02_0172 - 14891923-14892102,14892894-14892980 28 8.5
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 8.5
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 8.5
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 8.5
01_06_1360 - 36650014-36650751,36652529-36652558,36652821-366529... 28 8.5
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 98.3 bits (234), Expect = 7e-21
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 18/141 (12%)
Frame = +3
Query: 87 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 266
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 267 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH------------------EAKI 392
QK + LR YK K PLDLR KKTRA+R+ LTKH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 393 KTRKEIRKKSLFPPRVYAVKA 455
KT +E +++ FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 55.2 bits (127), Expect = 6e-08
Identities = 39/106 (36%), Positives = 52/106 (49%)
Frame = +3
Query: 75 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 254
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 255 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 392
Y K K PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 285 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 455
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K P + Y +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 183 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 356
+A + GV K+S A R +V H+ +++ RNH ++KY+ L +
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRS-SLLGETPGR 59
Query: 357 MRKALTK 377
R+A TK
Sbjct: 60 SRRAKTK 66
>09_04_0512 + 18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +3
Query: 177 LRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRA 356
L A+ + K R +RKA A++ ++ K + + KK + D+ AKK +
Sbjct: 1329 LEAAEAAKRLEEKKQNEREMRKAAAKLERERLKQEKELKQKQEEQKKKRDADVAAKKRQR 1388
Query: 357 MRKALTKHEAKIKTRKEIRKKSLFP 431
+ + + K K +E RK+ P
Sbjct: 1389 GEEERKEKQRKRKCTEEARKQQKQP 1413
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 285 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 419
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 285 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 419
+ L NH+ N+K K + + KK +KA+ K +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279
>01_06_1360 -
36650014-36650751,36652529-36652558,36652821-36652919,
36653664-36653936
Length = 379
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Frame = +1
Query: 736 FMXQVQGGGWEXFSALMNXP------TRGXRGFGYW 825
F+ ++G GW F+ N P T G GFG W
Sbjct: 207 FIDTLKGSGWSIFAVRGNFPKECPMATEGSNGFGQW 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,273
Number of Sequences: 37544
Number of extensions: 240272
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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