Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G07
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    39   0.001
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    36   0.006
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    28   2.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    27   3.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   6.5  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   8.6  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 71  NNETWLRVDETLKKKRIFRKFTYRGVDLDQLL 166
           N++  +RV E L+KKR FR F YRGV+L+QLL
Sbjct: 5   NHDEAVRVAE-LRKKRTFRTFAYRGVELEQLL 35



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 165 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 287
           L +  EQL++L H         GL       ++KLR+AK E
Sbjct: 35  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSE 75


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/27 (66%), Positives = 22/27 (81%)
 Frame = +2

Query: 86  LRVDETLKKKRIFRKFTYRGVDLDQLL 166
           +RV E L+KKR FR F YRGV+L+QLL
Sbjct: 9   VRVAE-LRKKRSFRTFAYRGVELEQLL 34



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 165 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKE 287
           L +  EQL++L H         GL       ++KLR+AK E
Sbjct: 34  LDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTE 74


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 19  SHYREFLK-ICFLILLSNKQRNMA-ESRRNPQEKAYFQEVHL 138
           S  ++F++ +  L +   KQR++  E +RNP+E  YF  + L
Sbjct: 258 SQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILL 299


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 193 SMSCSLGIXKELIEINSPVSELPENTLFLEGFVDSQPCFVVYLTEELKSKS*GIPYS 23
           S+SC++        I SP+ E P N    E +   QP     +T++    S  I YS
Sbjct: 97  SLSCTVETPLANKTIVSPLPESPSNDALTESYFFRQPASKYSITQDSPRVSSTIAYS 153


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +2

Query: 11  ITDLTIGNSLRFAF*FFCQINNETWLRVDETLKK---KRIFRKFTYRGVDLDQLLXYAQ* 181
           I  + +   +++ F F  Q+N++  + +  T+ +      F  +TY  + LDQLL     
Sbjct: 467 IHPMVLAEDIKYVFTFRNQLNSQQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHN 526

Query: 182 ATHGINACPCAPAV 223
             H   +   AP +
Sbjct: 527 HVHIFTSLLIAPHI 540


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 64  SNKQRNMAESRRNPQEKAYFQEVHLPGS*SRSA-PXICPMSN 186
           + K+RN  ++R NP +K  F E  +P + S +A P +  + N
Sbjct: 5   NGKRRNHRKNRMNPIQKKGFLEQEIPLNNSEAALPLLSRLDN 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,834
Number of Sequences: 5004
Number of extensions: 21365
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)