Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G07
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...    42   5e-04

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +2

Query: 104 LKKKRIFRKFTYRGVDLDQLL 166
           LKKKR FRKF YRGVDLDQLL
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLL 32



 Score = 32.3 bits (70), Expect = 0.50
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 165 LXMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 284
           L M  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 32  LDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,375,955
Number of Sequences: 27780
Number of extensions: 118143
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)