Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_G02
         (823 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 218 NCVKNPVIALISAEKFQSVIITLKDSRICAA 310
           N V NP++  IS  K+++ +     S  CAA
Sbjct: 323 NAVYNPIVYGISHPKYRAALFAKFPSLACAA 353


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 821 PPPPXN*HFADSLQQ*KIFDRCTGSSA 741
           PPPP +    DS +  KIFD  T  +A
Sbjct: 344 PPPPPSSSGPDSAKLDKIFDIATKENA 370


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 433 FPIHHWWARGAITL*RGTNRPETLNIVS 350
           F +  W  +  +T+ R    P TLN++S
Sbjct: 68  FDVDQWRDKTFVTILRYDGVPSTLNVIS 95


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 605 RLCYSKPITCGVSLTFINSVVRREYRPSD 519
           R+C  K ITC +       +V  + +P +
Sbjct: 157 RICILKSITCALQFCHNAGIVHADVKPKN 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,611
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)