Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F20
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.6  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.0  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   6.0  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 81  LCSLQLWNPWLQ 46
           +C +Q+W+PWLQ
Sbjct: 768 ICGMQVWHPWLQ 779


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +1

Query: 499 STPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGAR-----TTTPR--PDHF 657
           ++PP +++ D     S  D P    N+S    ++  ++Q    R     TT+P+  P+  
Sbjct: 379 NSPPSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPH 438

Query: 658 NESIMTESRLXLRDPTPP 711
           +ESI +++R       PP
Sbjct: 439 SESI-SDTRPSTPRKVPP 455


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -2

Query: 473 GSTALSSWISLGGALVPTCWSCPITKIL--SGTFMSNFSLA*SQP-ETIPLGAVSSSIIS 303
           GS +LSS   L  + + T  S PIT  +  S + +SN ++  + P  T      SSSI+S
Sbjct: 76  GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 541 PSADDFPHGMPNNSPP--RNIKTYRSQGDGARTTTP 642
           PSA  FP  +PN+  P  +NI +  S+      +TP
Sbjct: 46  PSATSFPSALPNSENPVIQNISSSSSEPHHTSQSTP 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,051
Number of Sequences: 5004
Number of extensions: 78313
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)