Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F20
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    31   0.81 
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    30   2.5  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    30   2.5  
Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   7.5  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical protein
            F46F11.9b protein.
          Length = 1282

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 503  VLTRTIPGSVGSTALSSWISLGGALVPTCWSCP 405
            ++ R +P S G T   SW++   ++ P  W CP
Sbjct: 1050 IVARLVPLSQGETIKESWLTTTTSVTPPKWPCP 1082


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical protein
            F46F11.9a protein.
          Length = 1280

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 503  VLTRTIPGSVGSTALSSWISLGGALVPTCWSCP 405
            ++ R +P S G T   SW++   ++ P  W CP
Sbjct: 1048 IVARLVPLSQGETIKESWLTTTTSVTPPKWPCP 1080


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 464 ALSSWISLGGALVPTCWSCPITKILSGTFMSNF 366
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 464 ALSSWISLGGALVPTCWSCPITKILSGTFMSNF 366
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


>Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 529 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 648
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 529 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 648
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +1

Query: 439  PREIQLDNAVLPT--DPGMVRVSTP-PRIITLDQHYFPSADDFPHGMPNN-SPPRNIKTY 606
            P    +  A LPT    G   V+TP P ++      F      P  MP    PP    T+
Sbjct: 755  PSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPSTMPTTPEPPTISSTF 814

Query: 607  RSQGDGARTTTPRPDHFNESIMTES 681
                  A   TP P H  +S  T S
Sbjct: 815  TPAATQASPATPTPQHVAQSAPTNS 839


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,777,030
Number of Sequences: 27780
Number of extensions: 450380
Number of successful extensions: 988
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)