Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F19
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 81 3e-16
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 79 8e-16
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 79 8e-16
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 79 1e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 79 1e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 2e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.013
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 29 0.62
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 80.6 bits (190), Expect = 3e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77
Score = 80.6 bits (190), Expect = 3e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 116 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153
Score = 80.6 bits (190), Expect = 3e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 192 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 229
Score = 80.6 bits (190), Expect = 3e-16
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM
Sbjct: 268 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 305
Score = 79.4 bits (187), Expect = 6e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 79.0 bits (186), Expect = 8e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 79.0 bits (186), Expect = 8e-16
Identities = 37/38 (97%), Positives = 38/38 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 166
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 78.6 bits (185), Expect = 1e-15
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 163
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 78.6 bits (185), Expect = 1e-15
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 163
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 40 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 163
QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG
Sbjct: 40 QQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 53 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 154
+QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 290 KPFICNSEKKLEYL-KCFAYFCFRSVN 213
KPF+ N+ ++E L KCF F F+S N
Sbjct: 620 KPFVVNATTEMEMLLKCFQVFFFKSKN 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,885,448
Number of Sequences: 5004
Number of extensions: 24552
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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