Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F17
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 30 0.39
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.67
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.67
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 29 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 28 2.1
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 2.1
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 3.6
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 27 3.6
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 6.3
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 6.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 8.3
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 26 8.3
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 8.3
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 8.3
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.39
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +1
Query: 178 EMADEEINGDTDDIQHDKDKTQKKTAKHDSGVADLE---KVTDYAEEMEISSQDISGALS 348
E+ +E G + +Q K K ++ KH +D E K TD + + +
Sbjct: 121 EILPKEPAGSKEAMQQKK-KEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRLKQKKQ 179
Query: 349 LIGDRRNKEAAERLEKEQELQ-KVSVK-KDDIELIVKELEISR 471
R +K ERLE++QEL+ K+ + K ++E I K E+++
Sbjct: 180 RSEFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAK 222
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 178 EMADEEINGDTDDIQHDK-DKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDI 333
E + EE++ + IQ + D+T + A HDS K EE E SS D+
Sbjct: 352 EASFEEVDDAKESIQEKEIDETTESKATHDSSETSSSKELPKEEEKESSSFDL 404
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.5 bits (63), Expect = 0.67
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Frame = +1
Query: 169 NKLEMADEEINGDTDDIQHDKDKTQKKTAKHD--SGVADLE-KVTDYAEEMEISSQDISG 339
N+ E DEE + + ++ + + ++K A+HD + D+E +V + EE+E +I
Sbjct: 110 NEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGR 169
Query: 340 ALSLIGDRRNKE--AAERLEKEQELQKVSVKKDDIELIVKE 456
I + + +R +E + Q+ ++ D E + +E
Sbjct: 170 EDGFIEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAEE 210
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 491 MFSLPVFLEISNSLTINSMS-SFLTETFCNSCSFSKRSAASLFLRSPINESAPDMSWEDI 315
+F+ P L+++ SL + ++S S T ++ S S + A + R+ + E PD SWE I
Sbjct: 186 VFNNPESLQVAASLLLPALSGSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWEAI 245
Query: 314 SIS 306
+S
Sbjct: 246 PLS 248
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.6
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = -1
Query: 497 PVMFSLPVFLEISNSLTINSMSSFLTETFCNSCSFSKRSAASLFLRSPINESAPDMSWED 318
P S + S+S + S SS ++ + +S SFS ++S S S+P S
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342
Query: 317 ISISSA*SVTFSKSATPLS 261
IS SS+ + S S+T S
Sbjct: 343 ISSSSSSPSSSSFSSTTSS 361
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 2.1
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Frame = +1
Query: 187 DEEINGDTDDIQHDKDK--TQKKTAKH-DSGVADLEKVTDYAEEMEISSQD-ISGALSLI 354
++++ T+ ++ ++ Q K+A+ DS + LE+ + E+ Q +SG S +
Sbjct: 267 NQDLYNQTEALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKM 326
Query: 355 GDRRN--KEAAERLE-KEQELQKVSVKKDDIELIVKELEIS 468
R N K+ +E KE +LQ + K+D ++ V+ +IS
Sbjct: 327 ESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQDIS 367
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/107 (16%), Positives = 50/107 (46%)
Frame = +1
Query: 166 YNKLEMADEEINGDTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDISGAL 345
+N ++ ++ + D++ + +KK +K S A +A+E + ++ +
Sbjct: 49 FNSDNDSNYDLKPEDDEVDEEVVPVKKKPSKK-SKKAKANAFEAFADEQSVEEEEEEDSE 107
Query: 346 SLIGDRRNKEAAERLEKEQELQKVSVKKDDIELIVKELEISRNTGRE 486
+ R+NK+++++ + ++ DD+ L +E E S + ++
Sbjct: 108 KPV--RKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKK 152
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/80 (21%), Positives = 41/80 (51%)
Frame = +1
Query: 196 INGDTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDISGALSLIGDRRNKE 375
++GD DD Q + + + K + ++E +++ ++ + I ++ ++
Sbjct: 424 LSGDADDFQANSNPFEDDD-KLEGANGEMEVTFTSGFDVDNNANSSEKDETTI-EKYKRK 481
Query: 376 AAERLEKEQELQKVSVKKDD 435
AAER ++ +EL+++ KDD
Sbjct: 482 AAERKQRRKELRQLKKTKDD 501
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 461 SNSLTINSMSSFLTET-FCNSCSFSKRSAASLFLRSPINESAP 336
S S +N ++ T+ F N C F+K S F R N AP
Sbjct: 39 SGSSVLNEINLSRTKNLFLNDCKFNKNSFEKFFARRLSNSVAP 81
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 333 YVLGGYFHFFSIIS-NFFQV-RHSAIMFSGFLLSFVFVMLNIICITIDFFVC 184
++ G+F FS+I + + R+ +F LSF F+ + I +F+C
Sbjct: 194 WISSGFFLLFSLIHLGLWTIERNKQKLFEETSLSFSFITTKLRLIETQYFIC 245
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 6.3
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Frame = +1
Query: 178 EMADEEINGDTDDIQHDK--------DKTQKKT--AKHDSGVADLEKVTDYAEEMEISSQ 327
E DEE+ G+ ++ + +K D+T+ K + DS + ++ +D + +++++
Sbjct: 270 EDEDEELEGEKEEEEEEKEKPEISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAKLTTE 329
Query: 328 DISGALSLIGDRRNKEAAERLEKEQELQKVSVKKDDIEL 444
+ SL D + + E E+EL + DD E+
Sbjct: 330 LVGNTDSLAEDEDDILEEDEDEDEEELLAIFDASDDSEI 368
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 6.3
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +1
Query: 205 DTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDISGALSLIGDRRNKEAAE 384
DT+ I D+D ++ + H VA+ EK+ D EE I + L + ++ E
Sbjct: 408 DTEVIIEDQDN--QEISNH---VAE-EKI-DSDEEETIDDAKSEMFVDLSEEEEVRQYEE 460
Query: 385 RLEKEQELQKVSVKKDDIELIVKEL---EISRNTGRENITGTQW 507
+K++ELQ+ D++EL EL + G ++ +QW
Sbjct: 461 YRKKQKELQEELEFPDEVELQPNELARERFKKYRGLRSLYTSQW 504
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 211 DDIQHDKDKTQKKTAKHDSGVADLEKV-TDYAEEMEISSQDISGALSLIGD 360
DD++ + +K T V +L +V D+AE ME+ Q+ A LIGD
Sbjct: 404 DDLEQSRIIFEKATHVPYKTVNELAQVWIDWAE-MELRHQNFDAARKLIGD 453
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 65 RESCETLRKCYKRRFCSFKFT*RLDSVDNGE 157
RE+C+ + ++R F K LDS D+G+
Sbjct: 317 RENCQITKLDFEREFSQLKLKDLLDSRDSGK 347
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 331 ISGALSLIGDRRNKEAAERLEKEQELQKVSVKKDDIELIVK 453
+SG S +G+R K++ E + + +Q++ D E +K
Sbjct: 86 VSGIKSTLGERLKKDSQELAQNRKRIQELEKSLGDAEEALK 126
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 27/67 (40%)
Frame = +1
Query: 232 DKTQKKTAKHDSGVADLEKVTDYAEEMEISSQDISGALSLIGDRRNKEAAERLEKEQELQ 411
D+ ++ + + + V DY + + + +SL+G +E ER EK E
Sbjct: 122 DEVVEQAKRQIEDIVSVWAVLDYTGTSMVERELLLAKVSLLGPDHFQEHFERSEKVAEST 181
Query: 412 KVSVKKD 432
K D
Sbjct: 182 NAKAKSD 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,348
Number of Sequences: 5004
Number of extensions: 39596
Number of successful extensions: 190
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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