Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F17
         (893 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.33 
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    26   1.3  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   3.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = +1

Query: 154 RTCKYNKLEMADEEING----DTDDIQHDKDKTQKKTAKHDSGVADLEKVTDYAEEMEIS 321
           RT K+N+ ++A+ E+       T+ +++ K +      ++      L +      E E+ 
Sbjct: 269 RTEKHNRCKLAEREMKDLEKPKTEAVEYLKQENTLTRTRNQQIQKYLCEQKRKIGEFEVE 328

Query: 322 SQDISGALSLIGDRRNKEAAERLEKEQELQKVSVKKDDIELIVKE 456
               +G L+   +  +   AER+EKE +L K  +K+ D  +  KE
Sbjct: 329 RDQAAGILAKHDETYDALKAERVEKE-KLVKEEIKQYDELVSAKE 372


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 187 LPFLVYYIYKFA-VIHRIKSLSKFKATKSSFIAFS*CLTRFT 65
           L FL++YI KFA +++   S   ++A++S  +  S  L  FT
Sbjct: 469 LTFLMFYIKKFACLVNSNPSAILYRASRSKSLFMSTLLISFT 510


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 CKYNKLEMADEEINGDTDDIQHDKDKT 240
           C+YN L+ AD    G  +    DKD++
Sbjct: 693 CEYNSLKDADGNGEGTEESTYRDKDES 719


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,948
Number of Sequences: 2352
Number of extensions: 9769
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 96334083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)