Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F16
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0002 - 24849189-24849825,24850267-24850328 31 1.7
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 30 2.9
07_01_0080 + 587674-588510 29 3.9
01_03_0005 + 11568545-11569119,11569179-11569191 29 3.9
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 25 4.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 5.1
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 29 6.8
03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705... 28 9.0
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 28 9.0
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 827 KKKXPXSXGGGGXFXXXKXPPPPPP 753
KK P GGG PPPPPP
Sbjct: 202 KKPQPADTSGGGGHPHPPPPPPPPP 226
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 830 PKKKXPXSXGGGGXFXXXKXPPPPPP 753
P P GGGG PPPPPP
Sbjct: 26 PLPPIPSCGGGGGGAGPTPPPPPPPP 51
>07_01_0080 + 587674-588510
Length = 278
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 815 PXSXGGGGXFXXXKXPPPPPP 753
P GG G F PPPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 754 GGGGGGXXXXKKXPPPPXEXGXFFXGXXXXXXXKKXXXPXXXGGGXG 894
GGGGGG PPPP G G P GGG G
Sbjct: 80 GGGGGGGTVMYTSPPPPYSGGG--GGSSTGGGGIYYPPPTGGGGGGG 124
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 24.6 bits (51), Expect(2) = 4.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 776 KXPPPPPPXXXXKKK 732
K PPPPPP K K
Sbjct: 79 KPPPPPPPPKQEKAK 93
Score = 23.0 bits (47), Expect(2) = 4.9
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Frame = -3
Query: 809 SXGGG-----GXFXXXKXPPPPPP 753
S GGG G K PPPPPP
Sbjct: 21 SSGGGRRKKAGRRGEAKPPPPPPP 44
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 830 PKKKXPXSXGGGGXFXXXKXPPPPPP 753
P+ P GGGG + PPP PP
Sbjct: 15 PQHPPPPQAGGGGGGEFYRGPPPQPP 40
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 754 GGGGGGXXXXKKXPPPP 804
GGGGGG + PPPP
Sbjct: 55 GGGGGGFLRLRSAPPPP 71
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 803 GGGGXFXXXKXPPPPPP 753
GGGG F + PPPPP
Sbjct: 56 GGGGGFLRLRSAPPPPP 72
>03_06_0144 -
31969609-31969866,31969961-31970371,31970472-31970542,
31970637-31970723,31970816-31971389
Length = 466
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 809 SXGGGGXFXXXKXPPPPPP 753
S GGGG PPPPPP
Sbjct: 53 SKGGGGRDTSGPKPPPPPP 71
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 214 ESAKKTIEELR--EKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 348
E A+K E L+ +K +L PE +K+ F +++ +F +F L+P E
Sbjct: 259 EEARKFNEALQRWDKNAVSLVPEGLKRFFLSIMSNFRDFEDELEPHE 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,018,684
Number of Sequences: 37544
Number of extensions: 369128
Number of successful extensions: 4944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4353
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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