Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F14
         (927 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   0.88 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical...    29   4.7  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +1

Query: 511 FXPXXGGXXNFFXXXKXPPPXGXXGFFFXPPXPXPPKKTXXPGFXGGGG 657
           + P  GG   F      PPP G  G +  PP   PP     PG  G  G
Sbjct: 423 YGPPQGGPGGF-----GPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPG 466



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 563 PPPXGXGXFFXXPXXXXPXKKPXPXXXGGGGG 658
           PPP G G +   P    P   P P   G  GG
Sbjct: 436 PPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 656 PPPPXXPGXXVFXGGXGXGGXKKXPXXPXGGG 561
           PP P   G     GG G GG    P  P GGG
Sbjct: 51  PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 656 PPPPXXPGXXVFXGGXGXGGXKKXPXXPXGGG 561
           PP P   G     GG G GG    P  P GGG
Sbjct: 51  PPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 562 PPPXGXXGFFFXPPXPXPPKKTXXPGFXG 648
           PPP    G +  PP P PP     P + G
Sbjct: 42  PPPPPCGGGYEAPPPPPPPSYAGGPSYAG 70


>AC024790-13|AAL32247.1|  311|Caenorhabditis elegans Hypothetical
           protein Y47D7A.13 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -2

Query: 656 PPPPXXPGXXVFXGGXGXGGXKKXPXXPXGGG 561
           PPPP   G     G    GG    P  P GGG
Sbjct: 31  PPPPPPCGGGCGGGAPAAGGYAVAPQAPIGGG 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,177
Number of Sequences: 27780
Number of extensions: 127258
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)