Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F12
(954 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.18
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.24
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.97
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.97
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.8
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -1
Query: 525 PXARXRGXXPP-IAXXXPPXPPGXXAXPXPPPPXPXRXXXXXPPXXPA 385
P R + PP ++ PP PP P PP P PP PA
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 525 PXARXRGXXPPIAXXXPPXPPGXX-AXPXPPPPXP 424
P A G PP PP PPG A P PPPP P
Sbjct: 753 PPAPIMGGPPP-----PPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 498 PPIAXXXPPXPPGXXAXPXPPPPXPXRXXXXXPPXXP 388
P A P P P PPPP P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = -1
Query: 495 PIAXXXPPXPPGXXAXPXPPPPXPXRXXXXXPPXXP 388
P PP P P PPPP PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 496 PXRXXXXPXPPGFXXPPXXPPPXPXP 419
P P PPGF PP PPP P P
Sbjct: 6 PGNPPPPPPPPGFE-PPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.32
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 498 PPIAXXXPPXPPGXXAXPXPPPPXP 424
PP PP PPG PPPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 468 PPGXXAXPXPPPPXPXRXXXXXPPXXP 388
PPG P PPPP P PP P
Sbjct: 5 PPGN---PPPPPPPPGFEPPSQPPPPP 28
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.97
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 425 GXGGGGXGXAXKPGGXGGXXXAXGGXL 505
G GGG G PGG GG GG L
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGL 251
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/64 (35%), Positives = 23/64 (35%)
Frame = +3
Query: 399 GXXXGXXGXGXGGGXXGGXXNPGGXGXXXXRXGAXSPXAGXRXAGPPGXXGGXXSXPXGG 578
G G G G GGG G PGG G G G GP G GG P G
Sbjct: 217 GHHHGGHG-GFGGGPGGFEGGPGGFGGG---PGGFGGGLGGFGGGPGGFGGG----PGGH 268
Query: 579 GXRG 590
G G
Sbjct: 269 GGPG 272
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 425 GXGGGGXGXAXKPGGXGGXXXAXGG 499
G GGG G PGG GG GG
Sbjct: 246 GFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -1
Query: 498 PPIAXXXPPXPPGXXAXPXPPPPXPXRXXXXXPPXXPA 385
PP A PP P G A P PP P PP PA
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAP------APPPAPA 481
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -1
Query: 474 PXPPGXXAXPXPPPPXPXRXXXXXPP 397
P PP + P PPPP PP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 23.0 bits (47), Expect(2) = 6.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1
Query: 441 PPPPXPXRXXXXXPP 397
PPPP P R PP
Sbjct: 312 PPPPPPSRRNRGKPP 326
Score = 21.4 bits (43), Expect(2) = 6.6
Identities = 10/34 (29%), Positives = 11/34 (32%)
Frame = -1
Query: 525 PXARXRGXXPPIAXXXPPXPPGXXAXPXPPPPXP 424
P R P PP G + P PP P
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -1
Query: 495 PIAXXXPPXPPGXXAXPXPPPPXP 424
PI PP P P PPP P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVP 1067
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,887
Number of Sequences: 5004
Number of extensions: 22101
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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