Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F11
         (958 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0168 - 1385439-1385979,1386081-1387438                           29   5.5  
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           28   9.6  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    28   9.6  

>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 196 YQLTXWFFSSSRSFLQKH 143
           +QLT W+F+SS SF  KH
Sbjct: 256 HQLTSWYFNSSPSFEHKH 273


>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 196 YQLTXWFFSSSRSFLQKH*ASEKQP 122
           +QLT W+F SS SF QK  A    P
Sbjct: 253 HQLTSWYFKSSSSFEQKLAAKVASP 277


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 196 YQLTXWFFSSSRSFLQKH*ASEKQP 122
           +QLT W+F SS SF QK  A    P
Sbjct: 256 HQLTSWYFKSSSSFEQKLAAKVASP 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,943
Number of Sequences: 37544
Number of extensions: 177421
Number of successful extensions: 236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)