Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F09
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    81   3e-16
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.87 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    28   1.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   8.1  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 36/74 (48%), Positives = 50/74 (67%)
 Frame = +1

Query: 340 AGPPEAVIPLGHYGWTVQDDLVCKVDIEDVPYFNAPIFLENKEQIGKIDEIFGNLRDYFV 519
           +GPP+ VI LG +    + ++VC+     +PYFNAPI+LENK QIGKIDE+FG +   + 
Sbjct: 24  SGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYF 83

Query: 520 SVKLGENIKAKSFK 561
           +VK  E I + SFK
Sbjct: 84  TVKPSEGIVSSSFK 97



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/80 (25%), Positives = 25/80 (31%)
 Frame = +2

Query: 566 GQQFFIDPAKLLPLKRFLPQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGXG 745
           G + ++   KL+PL RFLP+P                                   GG  
Sbjct: 99  GDKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGG-N 157

Query: 746 XXGGFGKXGGGXFXXXGGGG 805
             GGFG    G F     GG
Sbjct: 158 SRGGFGGGSRGGFGGGSRGG 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
 Frame = -3

Query: 804  PPPPXXXKXPPPXLPK----PPXXPXPP 733
            PPPP     PPP  P     PP  P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -3

Query: 840  IXXPCXRRFSEXPPPPXXXKXPPPXLPKPPXXPXPP 733
            +  P  R  S  PP       PPP +  PP    PP
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 831 PCXRRFSEXPPPPXXXKXPPPXLPKPPXXPXPP 733
           P   R ++  PP      PPP  PKP   P  P
Sbjct: 410 PSNFRVTQGAPPSHTYGPPPPVQPKPKISPTTP 442


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 593 SRDQ*KIAALPLKLFALIFSPNLTDTK*SLRLPNIS 486
           SRD+   +A P   F L FSP+L D     R  NIS
Sbjct: 332 SRDRGAFSAPPAPFFPLGFSPHLNDESSRSRWSNIS 367


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 804 PPPPXXXKXPPPXLPKPPXXP 742
           PPPP      PP  P PP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 743 GXXGGFGKXGGGXFXXXGGGG 805
           G  GGFG  GGG     GG G
Sbjct: 121 GPHGGFGGRGGGRMGGRGGRG 141


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 606 KGSNFAGSMKNCCPSLETLRFD 541
           K   + G+ KN CPSL  + +D
Sbjct: 328 KNGMYVGTAKNLCPSLRVVDYD 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,476
Number of Sequences: 5004
Number of extensions: 37191
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)