Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F07
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z73427-8|CAA97804.1|  302|Caenorhabditis elegans Hypothetical
           protein F58B3.8 protein.
          Length = 302

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 527 HVPYHYTRRPLNYFNIYYQTSSCG 598
           +VP++ TR P+N+ NIY  T  CG
Sbjct: 59  NVPFNVTRIPVNFDNIYNITIKCG 82


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 833 IRIFKDELYTFDIFDCYNLLVLYFFQRKLSLKSYFY 726
           I I K   + F +F  YN++VLY    K++  + FY
Sbjct: 257 IIILKQAFFIFLMFQIYNIIVLYGKTLKMTTVTAFY 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,523
Number of Sequences: 27780
Number of extensions: 316089
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)