Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F06
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.90 
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.8  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   4.8  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   8.4  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 365 SIECYFYFVFQSNQFPLKH**YHIFFVFV*QPINW*QFLNPKHRLL 228
           S+EC+  FV++S  F       H     + +P+ +  FL P   LL
Sbjct: 609 SLECFRIFVYRSALFAFNKSNVHEIIQLLNEPVKYHNFLKPSEALL 654


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -2

Query: 282 CLTANKLVAIFKSK-------TPSFAFCNNETNLVVSKPKDFSYLLYFKSVIAKD*TRKH 124
           C TA +++ + KS          +F  C +  N   S PKDFS+ L  K       + + 
Sbjct: 116 CTTAEEVLLLLKSSDFVAHDLNHAFDDCKDFDNADGSVPKDFSFELVLKEWFPMHASTEF 175

Query: 123 RFFVK 109
           R FVK
Sbjct: 176 RCFVK 180


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 VSLLQKAKDGVLDLKIATNLLAVRQKRRIYDITNVLEGIGL 331
           V++ QKAK      K A N +  +++R I  ITN++    L
Sbjct: 460 VTIFQKAKHTKHSFKAAYNEIRHKKQRLIKQITNIMHNFNL 500


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 428 VFLIPLPFYQFHFYHNRDLLLSIECYF-YFVF 336
           + L+PL F  F F     LL ++  YF  F+F
Sbjct: 485 ILLVPLQFISFRFNRRLSLLFAVLTYFSTFIF 516


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 185 KIFHIFCILNQSLPKIKQENIDFLSNYPVK 96
           KIFH F   N+   + + +++ F+S+Y ++
Sbjct: 319 KIFHRFTSSNEKYDQTRSDSLPFMSDYDLE 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,490
Number of Sequences: 5004
Number of extensions: 64203
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)