Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F06
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   8.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   8.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -3

Query: 188 PKIFHIF----CILNQSLPKIKQENI 123
           PK+ H       IL  S+PKIK  NI
Sbjct: 438 PKVLHAIRRGASILRVSMPKIKDVNI 463


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 QLNLFHYYRKQKTVFWI 248
           +LN ++YY ++   +W+
Sbjct: 229 ELNAYYYYMREMLPYWM 245


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 198 QLNLFHYYRKQKTVFWI 248
           +LN ++YY ++   +W+
Sbjct: 229 ELNAYYYYMREMLPYWM 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,627
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)