Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F04
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -1

Query: 535 PXP-PRPXPKKXXXXPXXXPPXPGXWXXP*PPPXXRXPPPGP 413
           P P P P P      P   PP PG      PPP    PPP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP----PPPPP 783



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = -1

Query: 577 PPXGGGIPX-AXXVXPXPPRPXPKKXXXXPXXXPPXPGXWXXP*PPPXXRXPPP 419
           PP    +P  A    P PP P P      P   PP       P PPP    PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPP----PPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -3

Query: 575 PXGGGDSXCXXRXXXPPXXXAEKTGXAPXXPXXFXRXLGXSLTPPXPPXXSPGTXXLP 402
           P G G S        PP   +   G  P  P       G S  PP PP  +P T   P
Sbjct: 326 PIGNGSSNSSL-PPPPPPPRSNAAGSIPLPPQ------GRSAPPPPPPRSAPSTGRQP 376



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/84 (26%), Positives = 25/84 (29%)
 Frame = +3

Query: 669 PPRGXXXGPPPWGASXXQXXFQRWXNPAGL*KNQAXXXXXXXXXXXXXXXTXXRXPXXVT 848
           PP+G    PPP   S      Q    P  L  ++A                    P    
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQ----PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNA 409

Query: 849 PPGKTXPXPXPPXXPLVAPXRXPP 920
               T P P PP  P  AP   PP
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPP 433


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 414 GPGGGXRXXGGG*GXXQXPGKGGWXXGXXXXFFGXGRGGXG 536
           G  GG    GGG G  +  G+GG   G      G  RGG G
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGR--GGARGGRG 58


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +3

Query: 366 PQXKXXXPXXXXXKXXGPGGGXRXXGGG*GXXQXPGKGGWXXGXXXXFFGXGRGGXG 536
           P+ K   P        GP G  R   GG    +   +GG+       F G  RGG G
Sbjct: 117 PKPKTVGPKKPKGARNGPAG--RGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFG 171



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 414 GPGGGXRXXGGG*GXXQXPGKGGWXXGXXXXFFGXGRGG 530
           G GG     GG  G      +GG+  G    F G  RGG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 834  PXXVTPPGKTXPXPXPPXXPLVAPXRXPP 920
            P    PP  + P P PP   +  P   PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,522
Number of Sequences: 5004
Number of extensions: 13433
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)