Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F03
         (1373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.070
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.070
 Identities = 30/123 (24%), Positives = 35/123 (28%), Gaps = 1/123 (0%)
 Frame = +3

Query: 615 GAXHPPXXXPRGVPXFXLAXXXXXDPXX-SSPXXPPIXXPXXARGXPXXSRRVRAPXXXL 791
           G   PP   PR  P               S+P  PP   P   R  P       A     
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP--GRSAPALPPLGNASRTST 414

Query: 792 PVXPSXXVXXPXXPPSXSTLXPPSXGXRLXXSRAXPPXXRRXSPLXXAAASRXGCPGXSP 971
           P  P+     P  PPS     PPS       +   PP      PL     +    P  +P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 972 RDP 980
             P
Sbjct: 475 APP 477



 Score = 29.9 bits (64), Expect = 0.86
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = +1

Query: 880  PTAVPPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPPALXXXAPLSQPS 1029
            P + PP    GA      PP     A   P G+PA PP L   AP   P+
Sbjct: 432  PPSAPPSLPMGAPAAPPLPPS-APIAPPLPAGMPAAPP-LPPAAPAPPPA 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/65 (27%), Positives = 24/65 (36%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPPALXXXAPLSQPSXRRXXXKXP 1056
            +P+A PPP    +  +   P P G      P GIP  P       P+ +PS        P
Sbjct: 1059 APSA-PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117

Query: 1057 HSXXP 1071
                P
Sbjct: 1118 SGAPP 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,102
Number of Sequences: 5004
Number of extensions: 21297
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 759101996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)