Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F03
         (1373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.47 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    33   0.47 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.82 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   3.3  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   3.3  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   3.3  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical pr...    29   7.7  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 892 PPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPP 993
           PPP   G   +   PPP       YP G+P PPP
Sbjct: 320 PPPSRFGPPGMGGMPPPP-PPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 892 PPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPP 993
           PPP   G   +   PPP       YP G+P PPP
Sbjct: 330 PPPSRFGPPGMGGMPPPP-PPGMRYPGGMPPPPP 362


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 32.3 bits (70), Expect = 0.82
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPPALXXXAPLSQPSXRRXXXKXP 1056
            SP   PPPR   A      PPP     +  P   P  PP      P++ PS +R   + P
Sbjct: 121  SPPPPPPPRKSRAGGSSPPPPPPPRVPRTPP---PRSPP--PRRPPMTPPSPQRRPPRTP 175

Query: 1057 HSXXP 1071
             S  P
Sbjct: 176  PSPEP 180


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXLXXXPPPX-GEXAQXYPRGIPAPPPALXXXAP-LSQPSXRRXXXK 1050
            SP   PPPR  G+      PPP  G        G P PPP     AP  S P+       
Sbjct: 296  SPPPPPPPR--GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 353

Query: 1051 XPHSXXPGG 1077
             P    P G
Sbjct: 354  PPTGRPPRG 362



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXL---XXXPPPXGEXAQXYPR-GIPAPPPALXXXAPL---SQPSXR 1035
            SP   PPP+  G+  L      PPP    +   PR G P PPP      P    S P  R
Sbjct: 236  SPPPPPPPK--GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 293

Query: 1036 R---XXXKXPHSXXPGGXLAXPXTQXFXNRIXXPPXAEXGAPPXXXRLPR 1176
                     P    P G L  P           PP A  G+PP   R  R
Sbjct: 294  AGSPPPPPPPRGSPPTGSLPPPQAG------GSPPPAGTGSPPPPPRQKR 337


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXLXXXPPPX-GEXAQXYPRGIPAPPPALXXXAP-LSQPSXRRXXXK 1050
            SP   PPPR  G+      PPP  G        G P PPP     AP  S P+       
Sbjct: 317  SPPPPPPPR--GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 374

Query: 1051 XPHSXXPGG 1077
             P    P G
Sbjct: 375  PPTGRPPRG 383



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXL---XXXPPPXGEXAQXYPR-GIPAPPPALXXXAPL---SQPSXR 1035
            SP   PPP+  G+  L      PPP    +   PR G P PPP      P    S P  R
Sbjct: 257  SPPPPPPPK--GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 314

Query: 1036 R---XXXKXPHSXXPGGXLAXPXTQXFXNRIXXPPXAEXGAPPXXXRLPR 1176
                     P    P G L  P           PP A  G+PP   R  R
Sbjct: 315  AGSPPPPPPPRGSPPTGSLPPPQAG------GSPPPAGTGSPPPPPRQKR 358


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 23/69 (33%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXLXXXPPPX-GEXAQXYPRGIPAPPPALXXXAP-LSQPSXRRXXXK 1050
            SP   PPPR  G+      PPP  G        G P PPP     AP  S P+       
Sbjct: 302  SPPPPPPPR--GSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 359

Query: 1051 XPHSXXPGG 1077
             P    P G
Sbjct: 360  PPTGRPPRG 368



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
 Frame = +1

Query: 877  SPTAVPPPRXXGAXXL---XXXPPPXGEXAQXYPR-GIPAPPPALXXXAPL---SQPSXR 1035
            SP   PPP+  G+  L      PPP    +   PR G P PPP      P    S P  R
Sbjct: 242  SPPPPPPPK--GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPR 299

Query: 1036 R---XXXKXPHSXXPGGXLAXPXTQXFXNRIXXPPXAEXGAPPXXXRLPR 1176
                     P    P G L  P           PP A  G+PP   R  R
Sbjct: 300  AGSPPPPPPPRGSPPTGSLPPPQAG------GSPPPAGTGSPPPPPRQKR 343


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 19/64 (29%), Positives = 22/64 (34%)
 Frame = +1

Query: 880  PTAVPPPRXXGAXXLXXXPPPXGEXAQXYPRGIPAPPPALXXXAPLSQPSXRRXXXKXPH 1059
            P  +PPP    A  +   PP  G        GIP PPP      P   PS      + P 
Sbjct: 80   PGGIPPPPPMFAGGIPPPPPMMG--------GIPPPPPMFGAPPPPPPPSGLGVAPQPPR 131

Query: 1060 SXXP 1071
               P
Sbjct: 132  PKTP 135


>Z74043-5|CAA98544.1|  588|Caenorhabditis elegans Hypothetical protein
            T19B10.9 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = +2

Query: 884  QPCXPPXXXARFXSXXCRRLXXRXPRXIPAGSPPXXQXSPXXPHSXNRPPEXSXRNXHTA 1063
            + C PP   + F +          P+ IPA   P  Q  P  P     PP  S  N  T 
Sbjct: 19   EACQPPMPASSFQNNGVPMTVPSSPQYIPANGAPLDQSGPIAP----PPPPSSVNNLGTG 74

Query: 1064 XCQ 1072
              Q
Sbjct: 75   TDQ 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,414
Number of Sequences: 27780
Number of extensions: 195053
Number of successful extensions: 586
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3881690894
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)