Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F02
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 262 3e-71
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 262 5e-71
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.87
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 1.2
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 2.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 4.7
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 8.1
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 26 8.1
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 262 bits (643), Expect = 3e-71
Identities = 125/237 (52%), Positives = 176/237 (74%)
Frame = +1
Query: 85 MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
MAVG+N+ LS G KKG+K+++VDPF+RK WY +KAP+ F VG TLVNRT G K A++
Sbjct: 1 MAVGKNKRLSKG-KKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNAND 59
Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
LKG + EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KW
Sbjct: 60 SLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKW 117
Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
QT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I +
Sbjct: 118 QTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTS 177
Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
+ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK + + KL+ELHGE
Sbjct: 178 SCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE 234
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 262 bits (642), Expect = 5e-71
Identities = 126/237 (53%), Positives = 173/237 (72%)
Frame = +1
Query: 85 MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
MAVG+N+ LS G KKG+K+++VDPF+RK WY +KAP+ F VG TLVNRT G K A++
Sbjct: 1 MAVGKNKRLSKG-KKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNAND 59
Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
LKG + EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KW
Sbjct: 60 SLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKW 117
Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
Q+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 118 QSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQAN 177
Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK + + KL+ELHGE
Sbjct: 178 GCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE 234
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.1 bits (62), Expect = 0.87
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +1
Query: 223 TLVNRTQG-TKIASEGLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 399
T VN+ TK+A KG +V++ L+ DAE + + F I EY++ N
Sbjct: 82 TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137
Query: 400 MDLTTDKLRWMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 549
D T K + +W ++ E + D + C+ ++ L+ K
Sbjct: 138 KDKTQGK---FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 280 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 453
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 454 IEANIDVKTT 483
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 601 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 732
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 447 LPFFNHPPELIGCEVHAVEVAEHITS 370
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 507 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 599
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 768 DLETGLLQHFHLSDANIAQRVDAMA 694
D++TGLLQH + S I + D++A
Sbjct: 325 DMDTGLLQHTYPSSVQILFQEDSVA 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,538
Number of Sequences: 5004
Number of extensions: 72782
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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