Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP07_F_F02
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 297 6e-81
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 295 2e-80
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 294 7e-80
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928... 29 4.9
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.9
06_03_0290 - 19193707-19193752,19193822-19194090 28 8.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 297 bits (730), Expect = 6e-81
Identities = 142/237 (59%), Positives = 187/237 (78%)
Frame = +1
Query: 85 MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
MAVG+N+ +S G KKG K++ VDPF +K WY +KAPS+F+ +G TLV+RTQGTKIASE
Sbjct: 1 MAVGKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASE 59
Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
GLK VFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKW
Sbjct: 60 GLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKW 117
Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
QTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ +
Sbjct: 118 QTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAS 177
Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
+ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK +F++ KLME+HG+
Sbjct: 178 SCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 295 bits (725), Expect = 2e-80
Identities = 142/237 (59%), Positives = 186/237 (78%)
Frame = +1
Query: 85 MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
MAVG+N+ +S G KKG K++ VDPF +K WY +KAPS+F+ VG TLV+RTQGTKIASE
Sbjct: 1 MAVGKNKRISKG-KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASE 59
Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
GLK VFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR +VKKW
Sbjct: 60 GLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKW 117
Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
QTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ +
Sbjct: 118 QTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAS 177
Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
+ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK +F++ KLME+HG+
Sbjct: 178 SCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 294 bits (721), Expect = 7e-80
Identities = 141/237 (59%), Positives = 186/237 (78%)
Frame = +1
Query: 85 MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
MAVG+N+ +S G +KG K++ VDPF++K WY +KAP++FS +G TLV+RTQGTKIASE
Sbjct: 1 MAVGKNKRISKG-RKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASE 59
Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
GLK VFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR +VKKW
Sbjct: 60 GLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKW 117
Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
QTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ +
Sbjct: 118 QTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAS 177
Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
+L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK +F++ KLME+HG+
Sbjct: 178 TCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
>11_06_0384 +
22990773-22990949,22991315-22991496,22992533-22992887,
22993124-22993426,22994077-22994313
Length = 417
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = -3
Query: 834 SDLXPXSPLXPPAFAVKFHQLRDLETGLLQHFHLSDANIAQRVDAMAGLLDVLGNGVRNQ 655
SD+ + P F F + D+ +G + FHL D +A M + + + +
Sbjct: 195 SDICISTSAAPTYFPAHFFKTTDVSSGKSREFHLIDGGVAANNPTMVAM-----SMISKE 249
Query: 654 LVHHLPEFRVSDVACNDFTHFL 589
++ +F++ A D+ H+L
Sbjct: 250 VLRENQDFKLGKPA--DYKHYL 269
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 640 EVVNKLIPDSIAKDIEKACHGIYPLRD 720
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 383 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 472
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,977,707
Number of Sequences: 37544
Number of extensions: 527224
Number of successful extensions: 1511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -