Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F02
         (878 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal pr...   361   e-100
AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA, i...   361   e-100
Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal prot...   345   4e-95
AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p pro...   284   1e-76
AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB, i...   270   2e-72
AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD, i...   199   5e-51

>AF034971-1|AAC62117.1|  268|Drosophila melanogaster ribosomal
           protein S3a protein.
          Length = 268

 Score =  361 bits (888), Expect = e-100
 Identities = 172/237 (72%), Positives = 200/237 (84%)
 Frame = +1

Query: 85  MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
           MAVG+N+GLS GGKKG K+++VDPF+RK WY VKAP+MF   Q+G TLVNRTQG +IAS+
Sbjct: 1   MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASD 60

Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
            LKG VFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKW
Sbjct: 61  YLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKW 120

Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
           QTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+
Sbjct: 121 QTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVS 180

Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
            ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLKK RF++SKL+ELHG+
Sbjct: 181 GADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237


>AE014135-4|AAF59372.1|  268|Drosophila melanogaster CG2168-PA,
           isoform A protein.
          Length = 268

 Score =  361 bits (888), Expect = e-100
 Identities = 172/237 (72%), Positives = 200/237 (84%)
 Frame = +1

Query: 85  MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
           MAVG+N+GLS GGKKG K+++VDPF+RK WY VKAP+MF   Q+G TLVNRTQG +IAS+
Sbjct: 1   MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASD 60

Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
            LKG VFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKW
Sbjct: 61  YLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKW 120

Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
           QTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+
Sbjct: 121 QTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVS 180

Query: 625 NSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
            ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLKK RF++SKL+ELHG+
Sbjct: 181 GADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237


>Y10115-1|CAA71201.1|  270|Drosophila melanogaster ribosomal protein
           S3a protein.
          Length = 270

 Score =  345 bits (849), Expect = 4e-95
 Identities = 168/239 (70%), Positives = 196/239 (82%), Gaps = 2/239 (0%)
 Frame = +1

Query: 85  MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
           MAVG+N+GLS GGKKG K+++VDPF+RK WY VKAP+MF   Q+G TLVNRTQG +IAS+
Sbjct: 1   MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASD 60

Query: 265 GLKGXVFEVSLA-DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKK 441
             KG VFEVSL  DLQ D D E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKK
Sbjct: 61  YFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKK 120

Query: 442 WQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCEIITRD 618
           WQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYA  +QVR IR  +M +IIT +
Sbjct: 121 WQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTDIITNE 180

Query: 619 VTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
           V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLKK RF++SKL+ELHG+
Sbjct: 181 VSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 239


>AY070949-1|AAL48571.1|  217|Drosophila melanogaster RE04220p
           protein.
          Length = 217

 Score =  284 bits (697), Expect = 1e-76
 Identities = 134/188 (71%), Positives = 158/188 (84%)
 Frame = +1

Query: 85  MAVGQNQGLSXGGKKGVKQQLVDPFTRKAWYXVKAPSMFSKXQVGTTLVNRTQGTKIASE 264
           MAVG+N+GLS GGKKG K+++VDPF+RK WY VKAP+MF   Q+G TLVNRTQG +IAS+
Sbjct: 1   MAVGKNKGLSKGGKKGGKKKVVDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASD 60

Query: 265 GLKGXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 444
            LKG VFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKW
Sbjct: 61  YLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKW 120

Query: 445 QTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVT 624
           QTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+
Sbjct: 121 QTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVS 180

Query: 625 NSELREVV 648
            ++L++++
Sbjct: 181 GADLKQLL 188


>AE014135-5|AAN06541.1|  218|Drosophila melanogaster CG2168-PB,
           isoform B protein.
          Length = 218

 Score =  270 bits (662), Expect = 2e-72
 Identities = 129/174 (74%), Positives = 147/174 (84%)
 Frame = +1

Query: 274 GXVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 453
           G VFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14  GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73

Query: 454 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 633
           IEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74  IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133

Query: 634 LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXRFEISKLMELHGE 795
           L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLKK RF++SKL+ELHG+
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 187


>AE014135-6|AAN06542.1|  163|Drosophila melanogaster CG2168-PD,
           isoform D protein.
          Length = 163

 Score =  199 bits (485), Expect = 5e-51
 Identities = 93/132 (70%), Positives = 111/132 (84%)
 Frame = +1

Query: 400 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 579
           MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD  SQRKTCYAQ +QVR
Sbjct: 1   MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60

Query: 580 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKXR 759
            IR +M +IIT +V+ ++L+++VNKL  DSIAKDIEK+C  IYPL DV IRKVKVLKK R
Sbjct: 61  KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPR 120

Query: 760 FEISKLMELHGE 795
           F++SKL+ELHG+
Sbjct: 121 FDVSKLLELHGD 132


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,456,127
Number of Sequences: 53049
Number of extensions: 859318
Number of successful extensions: 2580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2578
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)