Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_F02
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 153 PIHSQSLVRCQGSVYVQQXASRHH--ACQPYPGNENCFG 263
           P   QS ++ Q S+Y+QQ   +HH  +   +  N+  FG
Sbjct: 85  PTQLQSFMQ-QHSLYLQQQQQQHHQDSSSEHASNQERFG 122


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 165 ASEWVDKLLLNTFFTALRQALILPDRHVQ 79
           A  W D +LLN    A+    +LP+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 165 ASEWVDKLLLNTFFTALRQALILPDRHVQ 79
           A  W D +LLN    A+    +LP+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 165 ASEWVDKLLLNTFFTALRQALILPDRHVQ 79
           A  W D +LLN    A+    +LP+ H++
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLK 367


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 347 LNLRKDLSASVSACRSARE 291
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,392
Number of Sequences: 438
Number of extensions: 4972
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)