Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP07_F_E23
         (1150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.7  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   4.9  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 148 CSIFDQDESVKLSXMVMSFANVQIHEGDGLSXRVCTSCIENLST 279
           C+  D D+S+     ++SF NV++H         C     N+ T
Sbjct: 178 CAPIDLDDSIIKRDDLLSFCNVEVHVSPNAILNACWLSERNIHT 221


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 247 VCTSCIENLSTAYLFXQQCERIDYLLXNSPXKAK 348
           V ++C+  L  A+     C++I YLL  +P  +K
Sbjct: 165 VISACLTVLVLAFWITNMCQQIQYLLWLTPLSSK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,111
Number of Sequences: 5004
Number of extensions: 31141
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)